BAC Information

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BAC

Clone NameMSMg01-443C21
Chromosome5 (Build37)
Map Location 70,982,366 - 70,982,832
singlet/doubletsinglet
Overlap genenone
Upstream geneGnpda2
Downstream geneGabrg1, Gabra2, LOC635092, 4930503B16Rik, Gabra4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443C21.T7 (MSMg01no443_c21.b1)MSMg01-443C21.TJ (MSMg01no443_c21.g1)
ACCAG532648AG532649
length1,118672
length of high quality
(start - end)
---467 (78 - 544)
definitionCHROMAT_FILE: MSMg01no443_c21.b1 PHD_FILE: MSMg01no443_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:42 2005CHROMAT_FILE: MSMg01no443_c21.g1 PHD_FILE: MSMg01no443_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCAAAGAGCGCGGAATTACGGAAGCGAGACGCGTGCAGCGATATAACG
GCACGCGCGGGCCGCCAAGGACAAAATACGGCGACGCAGAGCAGAGAAGA
ACCAAACGGGCGCGAGACAAGATACAGAGGGAGGAGACAGGGGGGCGACA
GGACGTNCAGAGCTCCCCCCCAATTCATACTCCCAAGAAAACGAAGAGGG
GCGGTCGGCGCGCACAACGGCCAAGGGGCAACAGGGTGTTGCGCCACCAA
AAGAAAGCAGGGAGGGGGGGAGGAGGTACCAATAAAGCGGCAAACACAAA
GGAAAGGAAAAGTATAGAGGGAAAGCGGAGAAGGAAAAAAAGAAGGGACC
CGACACAGCGAGGGCAGGGGAGAAGGAAAACGAGAAGAGAGAGGAAGGAA
AACGCCGGAGAGAACTCAGGAAACAAATAGATTGGCGACGCACCGGACCG
GGTAGAACCCCCCCGAAAGGGAACAGATAAAGACAAGGGGCCAAGGCCGC
AAGCATAGTCCGGTAAAAAGCGTGTGGGAGGGAGCGGAGACACACGAGAC
TCACGCAACGACAACCTCGGGGAGCGAACACGCGCGCCCAAACTCACGGG
AGGCGGCGCGACCACACTCTACGGGTCGCCACCGCCGGATGTAACCAGAG
AGGGGCGGGGCCATATAGGGGGAGCGCGCCCAAAACCCACCGAGATAAAG
CACCCACGCCCCATAATGNCACAAGTAGGAGGCGCGCGCANATCAGAAGA
AGTGCCGCAACGCAGACGCCGGGGCGTGAGTTTAGCCCCCACGATGACAT
CTATATTCAATGGCGAACAATCAACCCANGAGTCGGGTGCGCCGCGCGCG
CACGCAAAAGTATCAGACCACAGATCGCGCGAGAGTCGACCATACCTATT
ACAAAAGAACGATGAGTGGTTACGACCACAGCCGCGTGGGAAAGAATTGG
TATCTCAGCTCAGATAAGTACGAGCCACCGCGCGGCTCACGCGCACCTAT
AACACGACGCACCTATTGGCCGCGGCAAGAGGCGCTCGAGGCCGATATAC
TTACTAAGAGCGGCGATTGCTTCGAGCGACACTATAAGGATAACAGCGAC
TAGTGTGCCATGACGAGG
CTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAACATCCACAGGGATGAAAG
TGAAACTTTCACTTCTGTTTTGAGTTGCTCAGACCACTTTAAAAAGAGAC
TGTCAAGCCCATTTTATTGTGTTTAAGAACTGTTCAGGTTGTAACTTGAT
AGAATAGTTCCTATGGAAACAGACTTCAAACACCTACATAAAGAGGAAAA
GAAAATATTTCCAGAGAGAAAATTAAAGTGATTTCCTGTAGCCTTTAAGA
TGGGTTAAAATTGAAATGTCAATTTTTTCTTAAGAAAGAAAACTAAATAG
ACTTTGTTTCACAAAGAGTTTTCTTTGACTGATGAACCTATAATGCAAAA
CATAAAAATATTTTCATTGTGTATATCTATTTGTTCCTCGATATTAATAT
ATTTTACATTTTTATTGGATTTCAATACTTTTGATGAGCCAGCTTGCCTC
CTTCTTAGGCTTAAAAATCGTTATATAGCTTTTAAAAATGCCGGTTATGA
TTAAACCTGATTCTCAAGATTGGGATATGCCCCACCTGTAACATCTATTA
CGAATGGCTCCGTACTGCCTGTGCCAAGAAACCGCCACCCCGTTTTTATA
TCAAGACCCTATCCTTGTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_c21.g1 MSMg01no443_c21.g1 CHROMAT_FILE:
MSMg01no443_c21.g1 PHD_FILE: MSMg01no443_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:42 2005
         (467 letters)



>mm_chr5_70982166_70983032
          Length = 867

 Score =  864 bits (447), Expect = 0.0
 Identities = 462/467 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaacatccacagggatgaaagtgaaactttcacttctgttttgagttgctcagaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaacatccacagggatgaaagtgaaactttcacttctgttttgagttgctcagaccac 260

                                                                       
Query: 61  tttaaaaagagactgtcaagcccattttattgtgtttaagaactgttcaggttgtaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaaaagagactgtcaagcccattttattgtgtttaagaactgttcaggttgtaactt 320

                                                                       
Query: 121 gatagaatagttcctatggaaacagacttcaaacacctacataaagaggaaaagaaaata 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatagaatggttcctatggaaacagacttcaaacacctacataaagaggaaaagaaaata 380

                                                                       
Query: 181 tttccagagagaaaattaaagtgatttcctgtagcctttaagatgggttaaaattgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccagagagaaaattaaagtgatttcctgtagcctttaagatgggttaaaattgaaat 440

                                                                       
Query: 241 gtcaattttttcttaagaaagaaaactaaatagactttgtttcacaaagagttttctttg 300
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcaatttaagcttaagaaagaaaactaaatagactttgtttcacaaagagttttctttg 500

                                                                       
Query: 301 actgatgaacctataatgcaaaacataaaaatattttcattgtgtatatctatttgttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgatgaacctataatgcaaaacataaaaatattttcattgtgtatatctatttgttcc 560

                                                                       
Query: 361 tcgatattaatatattttacatttttattggatttcaatacttttgatgagccagcttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcgatattaatatattttacatttttattggatttcaatacttttgatgagccagcttgc 620

                                                          
Query: 421 ctccttcttaggcttaaaaatcgttatatagcttttaaaaatgccgg 467
           ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 ctccttcttaggcttaaaaatcgttatatagtttttaaaaatgccgg 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)