Query= MSMg01no443_g21.b1 MSMg01no443_g21.b1 CHROMAT_FILE:
MSMg01no443_g21.b1 PHD_FILE: MSMg01no443_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:01 2005
(464 letters)
>mm_chr5_119436627_119437490
Length = 864
Score = 851 bits (440), Expect = 0.0
Identities = 457/466 (98%), Gaps = 7/466 (1%)
Strand = Plus / Minus
Query: 3 gaattctaccccc----tttccaacataagagagtaaggcatagaggcttgctagtgtga 58
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaattctacccccaaag---ccaacataagagagtaaggcatagaggcttgctagtgtga 627
Query: 59 gctccaggctgggaaagcagacacaagcatcactgtcctagctgaatccgagatctctgg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gctccaggctgggaaagcagacacaagcatcactgtcctagctgaatccgagatctctgg 567
Query: 119 gtcagtgggagatcctgtctcagaaagcagtggagggctggcagtgtagctcaggagtcc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtcagtgggagatcctgtctcagaaagcagtggagggctggcagtgtagctcaggagtcc 507
Query: 179 aagaacttgccaccaaactggagggcatgagttggatcattagggtgggacccaaatgat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagaacttgccaccaaactggagggcatgagttggatcattagggtgggacccaaatgat 447
Query: 239 agcagaagagaattgattgctgcaagctgtcccctattctcaacaagccatctcccaaat 298
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 446 agcagaagagaatcgattgctgcaagctgtcccctagtctcaacaagccatctcccaaat 387
Query: 299 ataaataaatataatgttgaaacatttaaatggtagcacatgcctttaatcccagcactc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ataaataaatataatgttgaaacatttaaatggtagcacatgcctttaatcccagcactc 327
Query: 359 agaggtcagaggcaagtgggtctctgagtttaaggccagcctggtctagtgttccagact 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaggtcagaggcaagtgggtctctgagtttaaggccagcctggtctagtgttccagact 267
Query: 419 aaccagggctacataatggagagactctgtcactgatgatgatgaa 464
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaccagggctacataatggagagactctgtcactgatgatgatgaa 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no443_g21.g1 MSMg01no443_g21.g1 CHROMAT_FILE:
MSMg01no443_g21.g1 PHD_FILE: MSMg01no443_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:02 2005
(409 letters)
>mm_chr5_119312698_119313506
Length = 809
Score = 752 bits (389), Expect = 0.0
Identities = 404/409 (98%)
Strand = Plus / Plus
Query: 1 catttctcagcaacttctcatgtttggtatcctgagtcccaaagcccctgtgtctctgga 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 catttctcagcaacttctcatgttcggtatcctgagtcccaaagcccctgtgtctctgga 260
Query: 61 tggcttgagatgctgagaaagttaccaccagaagggctttgttagccttcgactctgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcttgagatgctgagaaagttaccaccagaagggctttgttagccttcgactctgaaa 320
Query: 121 tgttccctcctgcttgcagggttcggtccctaactggcattttgaaggtatcagaaggaa 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttccctcctgcttgcagggtttggtccctaactggcattttgaaggtatcagaaggaa 380
Query: 181 cctttaggaggccaggctggaagaaataggcctctaggagcaggctgtgagggttgcact 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttaggaggccaggctggaagaaataggcctctaggagcaggctgtgagggttgcacc 440
Query: 241 ctctcctcctctgctctcttgtctatggggacagagaaatcacagccacccactcctgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctcctcctctgctctcttgtctatggggacagagaaatcacagccacccactcctgtg 500
Query: 301 aacacttccatgccccactgtgctgaacccctgacaaccccgagtcaaatctgtcctttt 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 aacacttccatgccccactgtgctgaacccctgacaaccctgagtcaaatctgtcctttt 560
Query: 361 aaagttgtttggttaggtatttcagtcagggtgcctttgtaggtgtggg 409
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 aaagttgtttggttaggtatttcagtcagggtgcctttgtagatgtggg 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
