BAC Information

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BAC

Clone NameMSMg01-443P08
Chromosome5 (Build37)
Map Location 40,789,762 - 40,978,461
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839, LOC100040502
Downstream geneLOC208522
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443P08.T7 (MSMg01no443_p08.b1)MSMg01-443P08.TJ (MSMg01no443_p08.g1)
ACCAG533239AG533240
length754746
length of high quality
(start - end)
355 (51 - 405)395 (76 - 470)
definitionCHROMAT_FILE: MSMg01no443_p08.b1 PHD_FILE: MSMg01no443_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:43 2005CHROMAT_FILE: MSMg01no443_p08.g1 PHD_FILE: MSMg01no443_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,978,113 - 40,978,461)(40,789,762 - 40,790,151)
sequence
CTTATTACTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGA
TCCGCGGAATTCCACTATTTTCAGTGAATAAGGGGGCCTAGTCATTATTA
CTTCCAGCAATGACTCTGGTGAACATATACATACATATATCGTTGTTTTG
TAAAAGGCACAGGTGATAGTCTGTCTTGGTTTTGAACTTGACTGCATTTT
GAGATTCCTAGAATGTGTGCAACACAACCACAACAACCATTTCAAGGGGG
ATCGATATGTAGGAAAATTGACGTGAAGGAGAGTGGAGACCCACTCCGTT
GTGAATTGGGGTTAATTTTCCAATTTATAATGAAGAGAAAAAGGCAGCAC
ATGCTGTTACTTCCAAGTGCTTTTTTTTTTCCCTCAGTGAGTAGGTTTAT
TGGTCGTAACTTCAGTCTCTAGTTTCTTTATTCTTTTAGAATGGACACAG
TGCCAGCATGGTTCCTAGGATTTCTCAAGCTTTCAGCCTTAAACAGGGAC
TTTTACAATATCCTGAATTATGTATTGAGAAACCAGATTTTTCTGACCTC
CTATAGCCGTTCACGCGTCATTATTGACATTACCTCCTATTTGTCGCCCC
ACCCCTATCATAAAATACTGGTTTTTACCTCCCCCCCCCCCCTTTTCTCC
CCTTCCCCCCCCTTCACTCCTTCTCTTCTATATCCCCCCCCCATCCTTCT
TTATCTCTATCCTTAGCGGTTATTTTTTGATATAAATTTTCTATCCTTCC
CACC
TTTTTTCGATGTAGTGGGTGGCCTGGNGGNCGCCTGGCCTCTTAATTTAG
GTGAACTATAGAAGTGTTCCCCGGAATTCCTTTATATATTTACCACACAT
TATTTTATTTTAATTGAGCCACTCCATCCTCTCTTTAATCCATCTATTTA
GAGGATTCCTAGTAGTTAATTTTACACCAATTTCTCATGCAATAATTTCT
CCAGGAAGTTAAAAACAAAATTATGTATGTTGATATTTTGTGTGAATGTG
TGTCTGTATACTGGTTGTATGCAACATTCGTGGAAGCCAGATGAAAGCAT
TAGATCTTTTGAGTCTGTAGTCATTTATAGTTGTGAGCCATTTTGTGCGT
TCTGGGAGTCAAATTGAATTCATCTGAAATAGCATCTGGTTCGTATAAGC
ACCAAGCCAGATTCTACATACTCTAGCTCCATAGGAAAGAGAACTACATA
TATCACGAATTTTAGCTCTGCTTATTTTGTCATTATATTTTTCAATTGTG
AATGTGTTTTTCACAAACCCCAAATTTAATTTTTACAAGTCCTTTTTGTC
TGAACGACTGAACAGTTCTATAGTATGTAACCGAACTTTTTATATGTTTC
AAAAAATGCGGGAAACCCTTTTGAACTTTCGGCCTTTAAAAATACCACAA
TTTTTTAAAGATATGGGCTTTTTTCTCCCCTGTTTCTCACCGCTAACTTT
TATTTTATATTTTCCCCCCCCTTATTTCCCCACTTTATTTTTCGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_p08.b1 MSMg01no443_p08.b1 CHROMAT_FILE:
MSMg01no443_p08.b1 PHD_FILE: MSMg01no443_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:43 2005
         (355 letters)



>mm_chr5_40977907_40978661
          Length = 755

 Score =  621 bits (321), Expect = 0.0
 Identities = 342/349 (97%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccactattttcagtgaataagggggcctagtcattattacttccagcaatgactc 66
           ||||||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 555 gaattccactagtttgagtgaataagagggcctagtcattactacttccagcaatgactc 496

                                                                       
Query: 67  tggtgaacatatacatacatatatcgttgttttgtaaaaggcacaggtgatagtctgtct 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tggtgaacatatacatacatatatcgttgttttgtaaaaggcacaggtgatagtctgtct 436

                                                                       
Query: 127 tggttttgaacttgactgcattttgagattcctagaatgtgtgcaacacaaccacaacaa 186
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 435 tggttttgaacttgactgcattttgagattcctagaacatgtgcaacacaaccacaacaa 376

                                                                       
Query: 187 ccatttcaagggggatcgatatgtaggaaaattgacgtgaaggagagtggagacccactc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccatttcaagggggatcgatatgtaggaaaattgacgtgaaggagagtggagacccactc 316

                                                                       
Query: 247 cgttgtgaattggggttaattttccaatttataatgaagagaaaaaggcagcacatgctg 306
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 315 cgttgtgaattggggttaattttccaatttagaatgaagagaaaaaggcagcacatgctg 256

                                                            
Query: 307 ttacttccaagtgcttttttttttccctcagtgagtaggtttattggtc 355
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttacttccaagtgcttttttttttccctcagtgagtaggtttattggtc 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no443_p08.g1 MSMg01no443_p08.g1 CHROMAT_FILE:
MSMg01no443_p08.g1 PHD_FILE: MSMg01no443_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:43 2005
         (395 letters)



>mm_chr5_40789562_40790356
          Length = 795

 Score =  685 bits (354), Expect = 0.0
 Identities = 381/390 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctttatatatttaccacacattattttattttaattgagccactccatcctctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctttatatatttaccacacattattttattttaattgagccactccatcctctctt 260

                                                                       
Query: 61  taatccatctatttagaggattcctagtagttaattttacaccaatttctcatgcaataa 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 taatccatctattcagaggattcctagtagttaattttacaccaatttctcatgccataa 320

                                                                       
Query: 121 tttctccaggaagttaaaaacaaaattatgtatgttgatattttgtgtgaatgtgtgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctccaggaagttaaaaacaaaattatgtatgttgatattttgtgtgaatgtgtgtct 380

                                                                       
Query: 181 gtatactggttgtatgcaacattcgtggaagccagatgaaagcattagatcttttgagtc 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 gtatactggttgtatgcaacattcgtggaagccagatgaaggcattagatcttttgagtc 440

                                                                       
Query: 241 tgtagtcatttatagttgtgagccattttgtgcgttctgggagtcaaattgaattcatct 300
           ||||||||   | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tgtagtcacagacagttgtgagccattttgtgcattctgggagtcaaattgaattcatct 500

                                                                       
Query: 301 gaaatagcatctggttcgtataagcaccaagccagattctacatactctagctccatagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaatagcatctggttcgtataagcaccaagccagattctacatactctagctccatagg 560

                                         
Query: 361 aaagagaactacatatatcacgaattttag 390
           |||||||||||||||||||| |||||||||
Sbjct: 561 aaagagaactacatatatcaagaattttag 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)