BAC Information

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BAC

Clone NameMSMg01-444M07
Chromosome5 (Build37)
Map Location 3,727,730 - 3,728,131
singlet/doubletsinglet
Overlap geneAnkib1
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik
Downstream geneKrit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444M07.T7 (MSMg01no444_m07.b1)MSMg01-444M07.TJ (MSMg01no444_m07.g1)
ACCAG533857AG533858
length805730
length of high quality
(start - end)
173 (121 - 293)488 (81 - 568)
definitionCHROMAT_FILE: MSMg01no444_m07.b1 PHD_FILE: MSMg01no444_m07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:46 2005CHROMAT_FILE: MSMg01no444_m07.g1 PHD_FILE: MSMg01no444_m07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAATCGCGGAATTCT
CTCTTTAGTTTCTCCCCATTTTTAAATTGGGTTATTTGGTTTGTTGTTTA
ATTTCTTGAAAATTATATATATTGGATATTAGCCCTCTGTCAGATGCAGA
GTTGGTGAAAATCCTTTCCCACTCTGTAGGTTGCTGTTTTGTCCTTTTGA
TTGTGTCCTTTGCCTTATAGAAGCTTTGCAGTTTCATGAGCCCCATTTAT
TATTTGTCGATCTTAGTGACAGCCATTGTTGTTCTGTTTGTGAAGCTAAC
TCCTGTGCCAGTATGTTTTTTTCTANTCTCTTCCATCTTATTCTGTGAAT
CTGGTTTTTTGCTAATAGCATCCCTCGGTCCTCTTTAACTTGTTCCCGTG
TACTATTTACTTATCCGTACCTCCCTTCTTCCCTTCCTTTTTTTCTTTCT
TTCTTTTTCCTCTTCTTTCATTTTTCCATTTTTTTTTTTTCCCCCCCCCC
CTTTTTTCCCTCCCCCCCTCTCCCTTTTTTTCCTCCCCTTTTTTTCTTTT
TTTTCACTTCTTTTGCTTTCTCTTTTTTTTCCCCTTTTTTCCCTTTATTC
CCCTTTTTCCCCTTTTTTCCTTTTTCTCTCTCTTTTCCTTCACCTTTTCC
CACTTTTTCCCCACTTTTTCTTATTTTTTTTTCAACCCTTCCCCCTCTCC
CTTTCCTCTTACCTCTTTATTTATCCTCCCTCACTCTTTCCTCCTTTATC
CTCTTCTCTCTCTTACTCATTTCCACCTTTCCTTTTTCCCCCCCCCCCCG
CTTCG
NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATAGAATCATCATTAAGG
TTTAAGAAATCATCTAATTGTCTATATAGCATCACTATAAGACAGAAGAT
CTTCATCATTCTGCATAGATCTCAAAAAGGTGGGCTAATACCTAGTGAGT
GTTTTATATATTTGTTAATAACAGGAAAGCAGATTAATAACAGGAATCTT
TCCTAAGATGAATATCTCCTGAGCCTGCCTACCAGAGCTCCATCATAGAT
TTTAATCCAAGGTGGGCCTTTTTCATGAAGATCACCTTCTAAGTATTAGG
TTGTTGGCTCCTGACAGCAAATCATTTTTAAGGTAGACATTTTTATGTAG
ACAATTGCATTTTTACCTTGTTATCATTTACCTGGTTTTTAGATGAAAGA
AAAAAAAGGATTTAAAAATCATTCTATTACTTAAGGTAATTGCCACATTT
TGATTCTGAAGTATCTATATTACTTTCCAGTACTGTTTTTAGTATTTTTC
TTTTATTTGCTTTTAGTTGCTGTAGAAATACTCACTGTTTTATAATTTGC
ATCCAAAATCACTTCTTGTCTTTCATTATGATCTTTATACGGGCCTTTGT
TGTTAATATTCCTGTCTCTAAATGGTGGCCCTATTTGCAGGTTGTGGCCG
AACCGTTCCGATTTGATTACCCTTTGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_m07.g1 MSMg01no444_m07.g1 CHROMAT_FILE:
MSMg01no444_m07.g1 PHD_FILE: MSMg01no444_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:46 2005
         (488 letters)



>mm_chr5_3727244_3728131
          Length = 888

 Score =  746 bits (386), Expect = 0.0
 Identities = 398/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 87  agatctcaaaaaggtgggctaatacctagtgagtgttttatatatttgttaataacagga 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 agatctcaaaaaggtgggctaatacctagtgagtgttttatatatttgttaataacagga 829

                                                                       
Query: 147 aagcagattaataacaggaatctttcctaagatgaatatctcctgagcctgcctaccaga 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aagcagattaataacaggaatctttcctaagatgaatatctcctgagcctgcctaccaga 769

                                                                       
Query: 207 gctccatcatagattttaatccaaggtgggcctttttcatgaagatcaccttctaagtat 266
           ||||||||||||||||||||||||||||||||  | ||| ||||||||||||||||||||
Sbjct: 768 gctccatcatagattttaatccaaggtgggcccatctcaggaagatcaccttctaagtat 709

                                                                       
Query: 267 taggttgttggctcctgacagcaaatcatttttaaggtagacatttttatgtagacaatt 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 taggttgttggctcctgacagcaaatcatttttaaggtagacatttttatgtagacaatt 649

                                                                       
Query: 327 gcatttttaccttgttatcatttacctggtttttagatgaaagaaaaaaaaggatttaaa 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gcatttttaccttgttatcatttacctggtttttagatgaaagaaaaaaaaggatttaaa 589

                                                                       
Query: 387 aatcattctattacttaaggtaattgccacattttgattctgaagtatctatattacttt 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 aatcattctattacttaaggtaattgccacattttgattctgaagtatctatattacttt 529

                                                     
Query: 447 ccagtactgtttttagtatttttcttttatttgcttttagtt 488
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ccagtactgtttttagtatttttcttttatttgcttttagtt 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)