BAC Information

Click to search

BAC

Clone NameMSMg01-446C20
Chromosome5 (Build37)
Map Location 135,443,098 - 135,592,860
singlet/doubletdoublet
Overlap geneCldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl
Upstream geneGats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4
Downstream geneTbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446C20.T7 (MSMg01no446_c20.b1)MSMg01-446C20.TJ (MSMg01no446_c20.g1)
ACCAG534934AG534935
length781758
length of high quality
(start - end)		241 (61 - 301)483 (59 - 541)
definitionCHROMAT_FILE: MSMg01no446_c20.b1 PHD_FILE: MSMg01no446_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:37 2005CHROMAT_FILE: MSMg01no446_c20.g1 PHD_FILE: MSMg01no446_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,443,098 - 135,443,336)(135,592,556 - 135,592,860)
sequence
CTATACGACTCACATAGTGCGGAGTCGCNCGGAATTCAGGGATCTTACCG
GAACACGGGACGTTCCCTTGACTAGGCAACCAGGCAGCCCCCAGGCTGGG
TTACACTGGATCTGGCCGAGACCGGAAGAAAGATCTCTTGGGCAGGGCCT
GTTTACGACTTAGTGAAACCTAGCCCTGGGGAGAGAGAAGTTTCTCCCGA
GGGGGAGGGGGAGGCAGGTGTGACTCACCCCTCCCTCTTTTGATCTATGA
CACCTAAGAGCCTACCTGGGAATTACCCCAGAGTAGCGCGCCAACCAGGC
TTATTTGATAGTTTAACCGAGTCCACCCTGACCTGGCCGCTCTCTTTTTG
TTACTTCCCACTGTACCCCCCATGGGAGAGTCAGGTTTCACCCAGAACTA
CGCACTTTCTGTTTGAGAATACTACTCCCTGTCTTGCTTGATCTAGGTCC
ATCTGCTTTAGACTCAGGATGTTCAGGCTTTATGCCTTAGGACGGCCTCC
TACTGTTGGTACTCTGCGTCGCAGTTTTCCGTGGTGCCGCTTTTCTTGTT
TTACTTTCCTTTATTCCTCTTCCTGCTCCTTCGTTCTTGTGTTCGCGTTG
CGCTCCGCCTTATGCCCCGTTTTCTCGCTGTATGCCTTTTCCCGTCTGTA
TTTTTTTTTTTTTTTTTTCCTCCCCATTGTTTATTTCTCCCTTTTCTTTT
CTCTTTTCCTCCCTCTTCCGTTATTTTCTTCTTCTCTCGCTCCACCTTTT
CGCCTCCCCTTACTCTCTCCTCTTCCTTACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAGATCTTGCCTGGGCTATATGAGACCCTGTTTTGAAAGGAGG
AAAGAAGAGAGGGAGGAGATGGCGCCATCAGTACAAGCTCTGGAAGCATC
AGGGTCTATGCTCGATGCTCACAATTTAGGTTAAAAAAAAGAAGCTGGGT
GATTGTTGGGCCCCCCCGGGGTCAGAGGAAAACTATGAGGGGAGAGAAGG
TGAAGGGAGAGAGAGAAGCCACCATGGGTTAGGTGAGTCATGAAAACGTG
GCCTGAGGGCTGGCCAATTGGCGTTCAGAGCAGCCCAGATGAAACACAGA
AAGTAATAACTCAGGGTTATCAATAGAACAGTAAAGCATTAATAGCATAG
AGGGTAGATAACTGCTCAGCTCTAGTGCTGAGCAAGGCTTATTGTAAATA
TAAAGGTTGTGTGTGTCTTTCATCCAGGAATTAAATGGGGAAAGGCAGGG
TCGAAATCTTGGATTGGGATTAAAAATTTCAGGGCTGTCGAGATGGCTCA
GCAGGTAAGAACACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCA
TTAACCACTTGGTGGCCCACAATCCACCGAAATGATATCTGACGCCCTCT
TCTGGTGCGCCTGAAAACAGCTATAGTGTACTTATGTATAATGTCCACCA
ATTCTTTGCGCCCTATGTTACTTCTTACTGATTTTACATAATCCCCTTAA
TTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_c20.b1 MSMg01no446_c20.b1 CHROMAT_FILE:
MSMg01no446_c20.b1 PHD_FILE: MSMg01no446_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:37 2005
         (241 letters)



>mm_chr5_135442898_135443538
          Length = 641

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgttcccttgactaggcaaccaggcagcccccaggctgggttacactggatctggccgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgttcccttgactaggcaaccaggcagcccccaggctgggttacactggatctggccgag 260

                                                                       
Query: 61  accggaagaaagatctcttgggcagggcctgtttacgacttagtgaaacctagccctggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accggaagaaagatctcttgggcagggcctgtttacgacttagtgaaacctagccctggg 320

                                                                       
Query: 121 gagagagaagtttctcccgagggggagggggaggcaggtgtgactcacccctccctcttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 321 gagagagaagtttctcccgagggggagggggaggcaggtgtgactcacccctccctcacc 380

                                                                      
Query: 181 tgatctatgacacctaagagcctacctgggaattaccccagagtagcgcgccaaccagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tgatctatgacacctaagagcctacctgggaattaccccagagtagcgcaccaaccagg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no446_c20.g1 MSMg01no446_c20.g1 CHROMAT_FILE:
MSMg01no446_c20.g1 PHD_FILE: MSMg01no446_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:37 2005
         (483 letters)



>mm_chr5_135592556_135593438
          Length = 883

 Score =  582 bits (301), Expect = e-170
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatcttgcctgggctatatgagaccctgttttgaaaggaggaaagaagagagggaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agatcttgcctgggctatatgagaccctgttttgaaaggaggaaagaagagagggaggag 246

                                                                       
Query: 61  atggcgccatcagtacaagctctggaagcatcagggtctatgctcgatgctcacaattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atggcgccatcagtacaagctctggaagcatcagggtctatgctcgatgctcacaattta 186

                                                                       
Query: 121 ggttaaaaaaaagaagctgggtgattgttgggcccccccggggtcagaggaaaactatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ggttaaaaaaaagaagctgggtgattgttgggcccccccggggtcagaggaaaactatga 126

                                                                       
Query: 181 ggggagagaaggtgaagggagagagagaagccaccatgggttaggtgagtcatgaaaacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggggagagaaggtgaagggagagagagaagccaccatgggttaggtgagtcatgaaaacg 66

                                                                       
Query: 241 tggcctgagggctggccaattggcgttcagagcagcccagatgaaacacagaaagtaata 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 65  tggcctgagggctggccaattggagttcagagcagcccagatgaaacacagaaagtaata 6

                
Query: 301 actca 305
           |||||
Sbjct: 5   actca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |