BAC Information

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BAC

Clone NameMSMg01-446D16
Chromosome5 (Build37)
Map Location 103,981,590 - 103,981,816
singlet/doubletsinglet
Overlap genePtpn13
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049
Downstream geneSlc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446D16.T7 (MSMg01no446_d16.b1)MSMg01-446D16.TJ (MSMg01no446_d16.g1)
ACCAG534974AG534975
length742793
length of high quality
(start - end)
227 (319 - 545)234 (84 - 317)
definitionCHROMAT_FILE: MSMg01no446_d16.b1 PHD_FILE: MSMg01no446_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:41 2005CHROMAT_FILE: MSMg01no446_d16.g1 PHD_FILE: MSMg01no446_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGGCGCGGAATTCTAGGCAA
TTACGACTACAAAGGAGACTGTCTTTAGAAACTATCCCCCACATAAATAA
TTGGGTGTTTGTACTACTGTACCACAGATATAACTGGGTGGGGGTACAGC
AGCACCAAGCAGACCAAGACAAACCCCTCCTTCTTTAGTAATGTAATTGA
GAGGGGAGCCTGGAGTACACGCTGGTAAAACTTCTGGCTTGTTTGTGTTT
TGTCTTTTGTTAAAGTAGCAGGATAGAATAGATATACATCATGATAAAAT
GAATCTAGTTNCTTGTATAACAATATTACGTAACCCCATTTCAGTTTTGG
AAAACAAACCAGACCAAGACATCCTTCTTTGGTTGGTCAGCACTTAAGGT
GACATTCCGCATCGTGAGCTGTTTTATCACCCTGACCTCTCATAGCACAG
GTATAACCAGGCATTTTCTCACTGGGTGTTTAATACTTGTCTCCTCTGAT
AAAAGCTTACTTTCCATGAAGCCACGGGCTCTGTATTTTGTACGTTCTAC
ACATGCAATAAATATCTGATCCATGGATCCATTTTCCATAGAACATCTAT
TACAAGAAAATTAGAATCCTGTAAAGGAAAATATGAATTTACTCCGAATT
CTCTCTTTCCTCTTTCCCTTTTCAGCCAAAGAGAATCATGAGACTTTAAT
AAAAAGTGATCTTCGCAGTTTGAAACAACTGGTGTTGGAGGG
CTTTCTCCACGAGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTTCTTACAAGGGAGAAGGG
GCTAAAGAAGGAACTACAGGCAATTTGGAAATGCCAGAAGAGGAGTCTTC
CCCAGGGATCGGTATCACAAGTGTTTTTTTTTTTTTCAATACCAAGGGGT
CAGCCCTGAAATCATATACATACAAGCAAGACTTAGCAGGTTTGATTTAT
ATATTTATGCTTTTATATATAAAAGGTAATGATAAAGAAAAAGATACCTA
GGGGGAATAGGGAGATGGCGAAGAGGATTTGTATTTTCTGCNGCCACAGA
CCCTACCCCAAACCGCCAGCCCCTTTTTTTCCTTCTTTCTTCACCTTTCT
TGCTGTTCCCTTTCTTTTCTTTTTCCTTTTCTCCTCACTTTTTTTTTCAC
CTTTTGCTTTTAACCCACACCCCTATTCCCCCTCTTTTTTTTTTTCCCCT
TATTCCACTATATATACACTCTCCTTTCTCCCTTGCCATCTCCTCCCCCC
CCCTGAGCGTTTTACCCCATTCCCCCTTTCACCCTTTGTTCCTTTCACCC
CACCCTCTCTTTTCCGCCTCCTTTTTTCCCCCTTCCCCCACCTCCTTTTA
CCCCTCTCGTCCCCCCCATCTTTAGTTCGATCATCACAGAAATCTTTTTT
CTTTTTTTTTTTTACCACGCCCCCGTTCCTTTCATTTATTATAAAACAAA
GCATTTGGTCCGCCTTAGCTCCTGCCTCTACTAATCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_d16.b1 MSMg01no446_d16.b1 CHROMAT_FILE:
MSMg01no446_d16.b1 PHD_FILE: MSMg01no446_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:41 2005
         (227 letters)



>mm_chr5_103981390_103982016
          Length = 627

 Score =  393 bits (203), Expect = e-114
 Identities = 221/227 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaatattacgtaaccccatttcagttttggaaaacaaaccagaccaagacatccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aacaatattacgtaaccccatttcagttttggaaaacaaaccagaccaagacatccttct 368

                                                                       
Query: 61  ttggttggtcagcacttaaggtgacattccgcatcgtgagctgttttatcaccctgacct 120
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 367 ttggtaggtgagcacttaaggtgacattccgcatcgtgagctgttttatcaccctaacct 308

                                                                       
Query: 121 ctcatagcacaggtataaccaggcattttctcactgggtgtttaatacttgtctcctctg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctcatagcacagctataaccaggcattttctcactgggtgtttaatacttgtctcctctg 248

                                                          
Query: 181 ataaaagcttactttccatgaagccacgggctctgtattttgtacgt 227
            ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 247 gtaaaagcttactttccacgaagccacgggctctgtattttgtacgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)