BAC Information

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BAC

Clone NameMSMg01-446F18
Chromosome5 (Build37)
Map Location 31,953,644 - 31,953,825
singlet/doubletsinglet
Overlap geneRbks
Upstream gene4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, LOC100040000
Downstream geneBre, Fosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446F18.T7 (MSMg01no446_f18.b1)MSMg01-446F18.TJ (MSMg01no446_f18.g1)
ACCAG535074AG535075
length739803
length of high quality
(start - end)
183 (364 - 546)149 (83 - 231)
definitionCHROMAT_FILE: MSMg01no446_f18.b1 PHD_FILE: MSMg01no446_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:52 2005CHROMAT_FILE: MSMg01no446_f18.g1 PHD_FILE: MSMg01no446_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCCGCTAAACGACTCACTATTTTCCAGACAGCCGCGGAATTCTAGNCTA
ATGCCCGAAATACTATAATAATGGTGATTGATTGAGATCTCCTTCCTAAT
ATTATTTATTAAACAATAGATTATATCACCACACTGACAGGTATGTTGTG
CAGATGTGCACATCATGTCCCTTAGCTGAGACACTGCTTCCTCTTACAGC
AGGCTCAGTAGGAGCCTGTGTCTCTCTGCCAATGCTGCCACATATTCTGC
ACACTAGAAGGTAGTACAGAAGCTACTCAGGAGCTTGTATACTAATTACA
ATTGCCAGATAAATTACTAAGGCTCACAGTTAAATTTGATTTTCAGAAAA
AAACTACCAATGCCTTTATATGTTTTTTTCACCGATTATTTGAAATTAAG
ATTTTTGGGCTTTTGGTTTGTATTTTTATTTGCTCAACTTGTCAACTTTA
ATATTAATTAGTCCTCCCCCTTTAGTCCCAGGACTCAGGAGGTGGGGACA
GATGGAGCTCTGTGAGTTCGAGGCCAGCCTGCTCTACAGAGGGAGTTCCA
GGACAGTCAGGGCTACACAGAGAAACCTTGTCTTGAAAAACCAGTAAATA
AATAAGTCCAGAAATTGTGAAATACTTTAAAGAGAAAACAGCATATCCTT
TTTTGTTTAATGAAGGATGCCCAAAATGGGGAGAGATCTAATTGGTATCA
AATGTGTGTGAATGGGGCCGCCTCAACTTCTCTTTCCTC
CGATCTCCACGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTACAGAAATTCAGCCCCTACCGCCAAAATA
CATACATAGCCAACAACAAGTAGGTGTTACCTGACCACAAGGTCAACACA
TAGCATAAGGATAGATAGATAGGTAGGTAGATAGACAGATAGATAGATAG
ATAGGTAGATAGATAGGTAGGTAGATAGACCNCTCCCCCCCCCCCCCCCC
CCCCTTTTTTTTCTTNNNCCCCNCNCCNCCCGCCCCCCCTCTCCCCCCCC
GNCCCCCNNNCCCCTNNCCCCCCTTTTCGGTGNTTTTCCCCCCCCCCCGG
CGCCCCNCCCCNNNCCGGCCCCTTTTTTTTCCCCTCCCCCCTTCCGCTTC
TCTGCCTTTCCCCCTTCTTTTCCCTTTCCCTTTTTCCCCTCTCTTTTTTT
TTTCGCCGTTCCCATTTTTCCACCTACCCTTTTTTTCCCCTCCTCTCCCT
TCTGGCGCCCTTTCCCCCTTTTTTTCCACCCTCCTTTCCCCCTATACCTT
CCCCCTACCCCCCCTCAGTCTTTTTTTTCTTTCCCCGACTTCCCCCCTCT
TTTCCTTTTCCCCCCCCCCCTCTCTTTTCCCCGTCGTTTTCTTCCCCTTT
CCCCCCCTCTGTTTTACTCCTCCCTCCCCCACCATCTTCCCTTGGATCAA
CACAGCTTTTTTTTTTTTTATTTTTCACCGTCCCTACCTTTGCCTTTCTG
TTTTTACACTAACCATCTCGTCCCCCTATGCCTCTTCCCTTTTCACCTTT
TCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_f18.b1 MSMg01no446_f18.b1 CHROMAT_FILE:
MSMg01no446_f18.b1 PHD_FILE: MSMg01no446_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:52 2005
         (183 letters)



>mm_chr5_31953443_31954025
          Length = 583

 Score =  344 bits (178), Expect = 2e-99
 Identities = 181/182 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   tttatatgtttttttcaccgattatttgaaattaagatttttgggcttttggtttgtatt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tttatatgtttttttcaccgattatttgaaattaagatttttgggcttttggtttgtatt 261

                                                                       
Query: 62  tttatttgctcaacttgtcaactttaatattaattagtcctccccctttagtcccaggac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttatttgctcaacttgtcaactttaatattaattagtcctccccctttagtcccaggac 321

                                                                       
Query: 122 tcaggaggtggggacagatggagctctgtgagttcgaggccagcctgctctacagaggga 181
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 322 tcaggaggtggggacagatggagctctgtgagttcgaggccagcctgctccacagaggga 381

             
Query: 182 gt 183
           ||
Sbjct: 382 gt 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)