BAC Information

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BAC

Clone NameMSMg01-446L05
Chromosome5 (Build37)
Map Location 24,061,307 - 24,231,817
singlet/doubletdoublet
Overlap geneAbcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik
Upstream geneSrpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik
Downstream geneCrygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446L05.T7 (MSMg01no446_l05.b1)MSMg01-446L05.TJ (MSMg01no446_l05.g1)
ACCAG535333AG535334
length739768
length of high quality
(start - end)
266 (65 - 330)245 (68 - 312)
definitionCHROMAT_FILE: MSMg01no446_l05.b1 PHD_FILE: MSMg01no446_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:18 2005CHROMAT_FILE: MSMg01no446_l05.g1 PHD_FILE: MSMg01no446_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,061,307 - 24,061,556)(24,231,573 - 24,231,817)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATTCCACC
CANTTTGCATACATTCTTAAACTGAGGGGTGGGGCTGGGAGTTCAAGGTT
GGGGACACTTGTCTAGGAAGACATCTCTGAGGCTGCACACTCAAAGTCCA
CAGGCAGTTGCTATAGGAATGTTAGGGCAAGCCAGGCGTGGTGGCGCACG
CCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCTGAGTGTA
AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAA
AGAAACCCTGTCTCTTTATTTAAATAAATAAATAAATAAATAAATAAATA
ATTATTTAACTACATAAACAAACAAATAAATAAATAGGAAATGTCAGGTG
TCATGGCACAGTGCGATATAACTCTGGCTACTCTTCTTGCACCTATCAAT
AAAGTAATAAAGTATCTCTCCCATGACCGAAGCAATCTATATAATAATTT
ATTCTGTCTTATGGCCCCCGAGCGCTAGAGTCCTTGATGGTACGTCTTGC
GCACCTACCATGCTGCATTCATTCATGGTCACTGCAGTATGAATCTGATA
TCTCACATCTCCCACTTCACATTTTCACCCTTATTCACCGATCCTCTTAC
CCCTTCGTTTTTGTCTTCCTATCTAGCCCCTTCCATTCATGTTCGAGATA
CTTTCCCAAAGTTTCCTTTTTGCCTCCTCCATCCTTTCN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGAAAATGTGTTTCAGTCCCAGCAGGAGGTA
CTCCCGGGTTATTATTTTGGAGGCTGCTGTTGTTGAGTGGTAGGCTCCCT
GTCTCTGTGCAGAAGACTGAGGGGAAGGTGGTCAGCAGTGAGTGAGGCTG
GGCTGGTGCTGAAGGCGTGGGCCCTGTCTCCTGTGTCTGATGGCAGGGAG
CTGGGAACAGTCGGGCCTGATTTCCTCCCAGAAGACCCATGTGACTCTCA
GTTCTGAGTGAAGGTCTGTTTATAGACTATGGGTCCTGGTGCTTTTGACA
ATGACCACTCTGGCACATCTGGGTGCTAGGTGTCACCTGCTGAAGGACTG
TATTTCAGAGACCTGGCTCGTGAGCCTCTAAGACCGCTACACTATAGTGG
ACAGAGTATCCAGAGTGGAACCACCGGTCATCCCTCCTCCCAGGGGAGAC
AGTTTGTGGATACGCTTCCTCCGGGTTGAGGGGATCTTTTTTTGTTCGCC
CCATATCAGCTTGATGCTGCCCCCTGTGTCCTAGCCATTATTTTTGCCTT
CGTTCCTTCAGTCCCTCCTTTCTTCTAACCTTATCCCGACGCCGCAATAC
CTGCTCTTTCTACTTCCCCATTGTTCCTCCATTTTTCACCCTCCTATCGT
TTTCCTCCCCTATCTAATTTCCCTTATCCTCCTTCGTCCTCTCCGTCCCT
ATTTCCCCTCTTCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_l05.b1 MSMg01no446_l05.b1 CHROMAT_FILE:
MSMg01no446_l05.b1 PHD_FILE: MSMg01no446_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:18 2005
         (266 letters)



>mm_chr5_24061107_24061772
          Length = 666

 Score =  468 bits (242), Expect = e-136
 Identities = 248/250 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaaactgaggggtggggctgggagttcaaggttggggacacttgtctaggaagacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttaaactgaggggtggggctgggagttcaaggttggggacacttgtctaggaagacat 260

                                                                       
Query: 61  ctctgaggctgcacactcaaagtccacaggcagttgctataggaatgttagggcaagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgaggctgcacactcaaagtccacaggcagttgctataggaatgttagggcaagcca 320

                                                                       
Query: 121 ggcgtggtggcgcacgcctttaatcccagcactcaggaggcagaggcaggcagatttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ggcgtggtggcgcacgcctttaatcccagcactcaggaggcagaggcaggcggatttctg 380

                                                                       
Query: 181 agtgtaaggccagcctggtctacaaagtgagttccaggacagccagggctacacaaagaa 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgcaaggccagcctggtctacaaagtgagttccaggacagccagggctacacaaagaa 440

                     
Query: 241 accctgtctc 250
           ||||||||||
Sbjct: 441 accctgtctc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no446_l05.g1 MSMg01no446_l05.g1 CHROMAT_FILE:
MSMg01no446_l05.g1 PHD_FILE: MSMg01no446_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:18 2005
         (245 letters)



>mm_chr5_24231373_24232017
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaaaatgtgtttcagtcccagcaggaggtactcccgggttattattttggaggctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 445 caggaaaatgtgtttcagtcccagcaggaggtactcccgggttagcattttggaggctgc 386

                                                                       
Query: 61  tgttgttgagtggtaggctccctgtctctgtgcagaagactgaggggaaggtggtcagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttgttgagtggtaggctccctgtctctgtgcagaagactgaggggaaggtggtcagca 326

                                                                       
Query: 121 gtgagtgaggctgggctggtgctgaaggcgtgggccctgtctcctgtgtctgatggcagg 180
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 325 gtgagtgaggctgggctggtgctgaaggagtgggtcctgtctcctgtgtctgatggcagg 266

                                                                       
Query: 181 gagctgggaacagtcgggcctgatttcctcccagaagacccatgtgactctcagttctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagctgggaacagtcgggcctgatttcctcccagaagacccatgtgactctcagttctga 206

                
Query: 241 gtgaa 245
           |||||
Sbjct: 205 gtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)