BAC Information

Click to search

BAC

Clone NameMSMg01-446L21
Chromosome5 (Build37)
Map Location 138,363,005 - 138,363,224
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13
Downstream geneLOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446L21.T7 (MSMg01no446_l21.b1)MSMg01-446L21.TJ (MSMg01no446_l21.g1)
ACCAG535365AG535366
length747759
length of high quality
(start - end)		258 (317 - 574)243 (63 - 305)
definitionCHROMAT_FILE: MSMg01no446_l21.b1 PHD_FILE: MSMg01no446_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:21 2005CHROMAT_FILE: MSMg01no446_l21.g1 PHD_FILE: MSMg01no446_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCTATACGACTCACTATATGCAGAGAATGCGCGGAATTCTCACCTGAT
GACTACAAAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAAT
CATCATTGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCATACCAG
TCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCATGGA
TGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGTAGGCTTGT
ACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATTCGACATAG
TACTACCTTTTTTTTCTGCAATACCTCTCCTGGGCATATATCCAGAAGAT
GCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTT
ATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGG
AATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCT
ATTAAAAAGTATGAATTTATGAAATTCCTAGCCATTGGATGGACCTGGAG
GGCATCATCCCGAGTGAGGTAACACATTCACAAAGGAACTCACACAATAT
GTACTTACTGATAAGTGGATATTAGCCCACAACCTAGGATACCCAGATAT
TTTATACTTTTTCCTAACCCATGAAACTCCAGAAAAATGAACACTGAATT
GGGCACCCTATGCCCCCCCCTATAATGGAAACCCCGACCCATGTTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCAGAAATATCATTTGGTAAGAAATATCGACCAAAACTGAGGCCAGTGTT
ATCATTATCACTGAGTACAAAGGTTATTGCTTCTTATCAGAAACTCAGGT
GAAATCATTGGCATTCTATAGCATTTCTGTCCTAGTTCACTTTCTGTCAT
TGTGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATAGAGAG
AGAGAGAGAGAAACCAGAACGACCAAAAACAACTTGGGGAAAAGGNTCAT
TTTGCATTTCGAGTGAGTTTCCANCACGAAGGAAAGNNAGGACAGAAAGT
TTTGTACATATCTGAAGACAGCAAGTGAAGCAGAGCCCACAGCTAACTAA
TGCTTCCCTCTTTCTCCTTATGGCTTGCTCAGCCTTCTTTCTTTTTTCCT
TTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTCCCT
TTCCTTTCCTTTCCCTTCCTTTTCTTTCCTTTCCTTTTCTTTCCCTTCCG
TCCCTTTCCCTTCCCTTTCTTTGCTTATGCATTCCCTTCCCTTCCTCTCC
TCTTCCTTTACCCTTCCCTGCGCCGAAAGCCACTGGTATGGGCGGCTTTT
TTTTTTTTTTTTTTCCCTTAGCCNCCGCCCTGCCATTTCTTTTCCCCTCT
TTACTTTCTCCCCTTCATCTTCGACTCTACCTGCCTCCTCCCTATATTGT
CTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_l21.g1 MSMg01no446_l21.g1 CHROMAT_FILE:
MSMg01no446_l21.g1 PHD_FILE: MSMg01no446_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:21 2005
         (243 letters)



>mm_chr5_138362805_138363447
          Length = 643

 Score =  358 bits (185), Expect = e-103
 Identities = 217/242 (89%), Gaps = 22/242 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggtaagaaatatcgaccaaaactgaggccagtgttatcattatcactgagtacaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggtaagaaatatcgaccaaaactgaggccagtgttatcattatcactgagtacaaag 260

                                                                       
Query: 61  gttattgcttcttatcagaaactcaggtgaaatcattggcattctatagcatttctgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttattgcttcttatcagaaactcaggtgaaatcattggcattctatagcatttctgtcc 320

                                                                       
Query: 121 tagttcactttctgtcattgtgggagagagagagagagagagagagagagagagagagat 180
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 321 tagttcgctttctgtcattgtgggagagagagagagagagagagagagagagagaga--- 377

                                                                       
Query: 181 atagagagagagagagagaaaccagaacgaccaaaaacaacttggggaaaaggntcattt 240
                              |||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 378 -------------------aaccagaatgaccaaaaacaacttggggaaaaggttcattt 418

             
Query: 241 tg 242
           ||
Sbjct: 419 tg 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |