BAC Information

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BAC

Clone NameMSMg01-447C08
Chromosome5 (Build37)
Map Location 148,872,755 - 148,873,223
singlet/doubletsinglet
Overlap geneC130038G02Rik
Upstream geneLnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3
Downstream geneLOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447C08.T7 (MSMg01no447_c08.b1)MSMg01-447C08.TJ (MSMg01no447_c08.g1)
ACCAG535673AG535674
length761797
length of high quality
(start - end)
469 (71 - 539)250 (76 - 325)
definitionCHROMAT_FILE: MSMg01no447_c08.b1 PHD_FILE: MSMg01no447_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:54 2005CHROMAT_FILE: MSMg01no447_c08.g1 PHD_FILE: MSMg01no447_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGAGTAATACCTCCCAAGTGATGCCCAAGGAATACGGGCAGT
TATCTCAAATAATGCTTTGACCCCTAAATGTTAAAAGTTCATGAATTACC
AAATATTCAGAGATGTGCCTTTGAGGAGGCAAAGCGCCCAGGCGGGCATT
CCTCAGAGGGAGCCGTTTTTATTAAAGCAGAACGTATTTATGTGTACTAA
AAATTAGAGGCGGTTCTGAATTATTCAAGGAGGAAGCTAAGTTTCATTCC
CCCCCGAATGTAAAGTATTTTGAAGTGAGGTGAGCTCATGTCTAAAATAT
TAGCCTAATATGAGAGCAAGCCTCTTTGCAGCACAGGCTGCTGCTCGTTC
AGCTCTCCTCGGAGTCGCAGGCGATGGTTTGTAACACAGTTCTGTGATTC
CTTGTTTCAGTGGGGGTTGGGCCAGTCTCTAATGAACAGGCTTATGGCTT
CGAACCTGTTCTTTCACAGGCTTAGGAGTGCTGAGGGAGACCTGGATGGA
CTCTTGGTGATTTAACATGCTCTGTTGGGCACGTTGGAGTACGTGTTGGA
GTGCTGAGGGCTCCGATTCTGGGGGGACACTTGTGATGAGGAACTGGCAA
ACTAGGCGGCCATGGGAACTTGATGGTTGATTCAATGGTACTTGTGGGTA
TTGAAATTATATTAACCCCCTGATCGATGTTTGAAAAATACAAACTGGGT
TTCAGGTACGT
NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAGGCTACACAGAGA
AACCCTGTCTCAGAAAAACCACCACCAACAACAAAAACAAAAACAAAAAT
AGCAAAACAAACAACGAATGAAAGAACGAAAGGAAGGAAGGAAGGAAGGA
AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGGAAGAAAGGAAGGAAGGAAGGAAGGTTATAAATAAAGGAGGAAAATTG
ACTTTGTAGATTACTGTGAGAATTGACAGAGTTAATGCCAGGAGATTTGT
AAGTTGACATAGGCCTCTGTCAGAGATGTCTCATCTCTTACTAACATTTC
GTCGCCCTTGCAAAGGATCAGGGTACAATTCCTTGACCCTCATGTCCAGT
CCCCACTGCCTGTTATTCTGCTTCCTCTATATTTGTGCCTCCTTCTCGCT
TTCCCGGCTACTATTCCCATTGTCTTTCTATTCCCATTTCCCCACCTCTT
TTCTTTCTCCCCCTATCTCTCTTTCTCTTTCCCAACTCCCTTCTCCTCCC
TTACTTCATCCCTCTCCCCATTCTTCTTTCCTTTGCGTTTATTTACCTCA
CTCCCTCCCTACACTTTTCACTTCCCCTCTCCCCCCTCCTCTTATCTTCC
CCTCCTTCTTCTATCTTTCCTCTACTATTCCCTTCTATTTCTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_c08.b1 MSMg01no447_c08.b1 CHROMAT_FILE:
MSMg01no447_c08.b1 PHD_FILE: MSMg01no447_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:54 2005
         (469 letters)



>mm_chr5_148872555_148873423
          Length = 869

 Score =  853 bits (441), Expect = 0.0
 Identities = 462/469 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaagtgatgcccaaggaatacgggcagttatctcaaataatgctttgacccctaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccaagtgatgcccaaggaatacgggcagttatctcaaataatgctttgacccctaaatg 260

                                                                       
Query: 61  ttaaaagttcatgaattaccaaatattcagagatgtgcctttgaggaggcaaagcgccca 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ttaaaagttcatgaattaccaaatattcagagatgtgcccttgaggaggcaaagcgccca 320

                                                                       
Query: 121 ggcgggcattcctcagagggagccgtttttattaaagcagaacgtatttatgtgtactaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcgggcattcctcagagggagccgtttttattaaagcagaacgtatttatgtgtactaa 380

                                                                       
Query: 181 aaattagaggcggttctgaattattcaaggaggaagctaagtttcattcccccccgaatg 240
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 aaattagaggcagttctgaattattcaaggaggaagctaagtttcattcccccctgaatg 440

                                                                       
Query: 241 taaagtattttgaagtgaggtgagctcatgtctaaaatattagcctaatatgagagcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagtattttgaagtgaggtgagctcatgtctaaaatattagcctaatatgagagcaag 500

                                                                       
Query: 301 cctctttgcagcacaggctgctgctcgttcagctctcctcggagtcgcaggcgatggttt 360
           |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 cctctttgcagcacaggcggctgcttgttcagctctcctcggagtcgcaggcgatggttt 560

                                                                       
Query: 361 gtaacacagttctgtgattccttgtttcagtgggggttgggccagtctctaatgaacagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaacacagttctgtgattccttgtttcagtgggggttgggccagtctctaatgaacagg 620

                                                            
Query: 421 cttatggcttcgaacctgttctttcacaggcttaggagtgctgagggag 469
           || ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 ctaatggcttcgaacctgttctttcacaggcttaggggtgctgagggag 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)