Query= MSMg01no447_c18.b1 MSMg01no447_c18.b1 CHROMAT_FILE:
MSMg01no447_c18.b1 PHD_FILE: MSMg01no447_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:57 2005
(529 letters)
>mm_chr5_145117013_145117942
Length = 930
Score = 953 bits (493), Expect = 0.0
Identities = 521/531 (98%), Gaps = 3/531 (0%)
Strand = Plus / Minus
Query: 1 atatccgttttaatcatctgctattaatagaatacaaaacaacttttgttttaattccac 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 atatccg-tttaatcatctgctattaatagaatacaaaacaacttttgttttaattccac 672
Query: 61 ttaggtccactgaacccctgagatttaaagttctctaaatttacttgtagtcatgattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttaggtccactgaacccctgagatttaaagttctctaaatttacttgtagtcatgattaa 612
Query: 121 aacccactctttggtcatttctctagattcttttttcacccactctttggtcatttctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aacccactctttggtcatttctctagattcttttttcacccactctttggtcatttctct 552
Query: 181 ag--ttttttttttcacccctaaaattgagtttctagatttgcaaggtcttagttcctga 238
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agttttttttttttcacccctaaaattgagtttctagatttgcaaggtcttagttcctga 492
Query: 239 aatcagaatttattgagttgctggaaaatcattttaaagcagcatgaaaatattttcaga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aatcagaatttattgagttgctggaaaatcattttaaagcagcatgaaaatattttcaga 432
Query: 299 attcattgtagctccaaaacgtatccacccctccatgtgtgcactataacatttattcta 358
||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 431 attcattgtggctccaaatcatatccacccctccatgtgtgcactataacatttattcta 372
Query: 359 gatagacaaagtagactgtattattatgattttgaaggttcacaattgtgaccaaaacct 418
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 371 gatagacaaagtagactgtattattatgattttgaaggttcacaactgtgaccaaaacct 312
Query: 419 gttcctattagtgtgctcccttaattaaatgacagtttttagaaatgccagaaatttgaa 478
||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 311 gttcctattagtgtgcttccttaattaaatgataatttttagaaatgccagaaatttgaa 252
Query: 479 tgtttaaagccttgtatttggattggcattgttcagacttaaatgatgtga 529
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgtttaaagccttgtatttggattggcattgttcagacttaaatgatgtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space: 477480
Effective search space used: 477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_c18.g1 MSMg01no447_c18.g1 CHROMAT_FILE:
MSMg01no447_c18.g1 PHD_FILE: MSMg01no447_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:57 2005
(465 letters)
>mm_chr5_144961919_144962783
Length = 865
Score = 872 bits (451), Expect = 0.0
Identities = 460/463 (99%)
Strand = Plus / Plus
Query: 1 tcccagggtagagagaccagctggagccaccctgtgttgccacagtgcctgggtcacagc 60
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 201 tcccagggtagagagaccagctggagctaccctgtgttgccatagtgcctgggtcacagc 260
Query: 61 aaccaacccacctactgaagccagggctcaccgtgtgatctgcgagtcagctttccctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccaacccacctactgaagccagggctcaccgtgtgatctgcgagtcagctttccctta 320
Query: 121 tgcctcaaaccctaggatgccgcagcccctcgcccagtaaccacagatgtgaccttagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcctcaaaccctaggatgccgcagcccctcgcccagtaaccacagatgtgaccttagct 380
Query: 181 ggaaatgatggtttatcgtttgttttattctgagacagtttctctatatagcacctggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaatgatggtttatcgtttgttttattctgagacagtttctctatatagcacctggcc 440
Query: 241 aacctgaacaaacagatacctaagagtttaccaaactgtccttttgagcattcccggaag 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacctgaacaaacagatagctaagagtttaccaaactgtccttttgagcattcccggaag 500
Query: 301 ttatttagaccatgaaggctctgacataatctactgatggattcaagatctgaggtgaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttatttagaccatgaaggctctgacataatctactgatggattcaagatctgaggtgaca 560
Query: 361 ttcggggagcggggcttggtaggaggaccgaggtcacagggaatgtgttgtcctggttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcggggagcggggcttggtaggaggaccgaggtcacagggaatgtgttgtcctggttac 620
Query: 421 accttgctgaggactcctcccgctgcctctctgcttcctggat 463
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accttgctgaggactcctcccgctgcctctctgcttcctggat 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
