BAC Information

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BAC

Clone NameMSMg01-447I08
Chromosome5 (Build37)
Map Location 86,081,020 - 86,081,266
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447I08.T7 (MSMg01no447_i08.b1)MSMg01-447I08.TJ (MSMg01no447_i08.g1)
ACCAG535954AG535955
length769803
length of high quality
(start - end)
414 (70 - 483)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no447_i08.b1 PHD_FILE: MSMg01no447_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:27 2005CHROMAT_FILE: MSMg01no447_i08.g1 PHD_FILE: MSMg01no447_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTCACCTGATGACTACCGAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCGTTGTTGGTGG
GATTGCAGGCTTGTACAACCATTCTGGAAATCCGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGTTATGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTATATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGACGGGCCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GGAACTCACTCAATATGTATTCACTGATAATTGGATATTAGCCCAATAAT
CTACGATCACCTAATAAAATACATTCATTTTTTATACACCTGGAACTCAA
GAAATAAAGGTATACTGTCACGGTCGGACTCTAATGTCCCCCTCTCTAAA
AGTGTGTAACACATACATN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACAGAGACCAATATGATTACATGCAC
ATGAAAACACATACACTATACAAATGAATGCATAGTTTCTGATATCACAG
GCTCAAAGTTTAATGAGAGACAAATGAACAATCAATTAGTTATGATACAG
CTCATTTTCACTGCACATATGCATATAATGTTAACTATAGACAATATAAC
TTGAACCATATTTCATTGTGTGGCAGTAAATACACAGTACTATTTGGTGC
ACACAGACATAAATATTGTGAATTTTTTTTATAGGGGTGGCAGTATAGGT
ACTGAGCTAGATAAGACTGGATAAAAGATTGAACTGATAAAGACAGTAAA
ACTACTGTGGAGGCATTGACAATTCTTGGGCGAGTAGTTGAAGACCGAAG
TTTTTTTAATGAAATAAATCAACTGTAGATACCTGTGAGAGAAAGTTTGA
GTCGTTTGATATTGATCGAGAATTATGCTCATTTTCATAACTTGATTTTC
GATAGAAGTCATATATCTCTTCATTTTGCTATTTCCCCTTGCTTTTTACA
TAGAACGCTGACGTTCCTTTATTATTCTCCAACGTCTACTCCTACGATTT
GACTTGCCCACTATTCCTTCTCTCTTCCCATTCTTCTTGTTCATCCTACT
TGTCTCCTTTTCTTTCCCTCTTCCCCTCTCCCTTCCTTCTCTATTGCTTC
TCCTTCGTAATACTTTGCGTCCACAACCTTCCTGCCTCCATATATCTTCC
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_i08.g1 MSMg01no447_i08.g1 CHROMAT_FILE:
MSMg01no447_i08.g1 PHD_FILE: MSMg01no447_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:27 2005
         (247 letters)



>mm_chr5_86080820_86081466
          Length = 647

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagaccaatatgattacatgcacatgaaaacacatacactatacaaatgaatgcatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagaccaatatgattacatgcacatgaaaacacatacactatacaaatgaatgcatag 260

                                                                       
Query: 61  tttctgatatcacaggctcaaagtttaatgagagacaaatgaacaatcaattagttatga 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 tttctgatatcacaggctcaaagtttaatgagggacaaatgaacaatcaattagttatga 320

                                                                       
Query: 121 tacagctcattttcactgcacatatgcatataatgttaactatagacaatataacttgaa 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacagctcattttcactgaacatatgcatataatgttaactatagacaatataacttgaa 380

                                                                       
Query: 181 ccatatttcattgtgtggcagtaaatacacagtactatttggtgcacacagacataaata 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaatttcattgtgtggcagtaaatacacagtactatttggtgcacacagacataaata 440

                  
Query: 241 ttgtgaa 247
           |||||||
Sbjct: 441 ttgtgaa 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)