Query= MSMg01no448_c23.b1 MSMg01no448_c23.b1 CHROMAT_FILE:
MSMg01no448_c23.b1 PHD_FILE: MSMg01no448_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:22 2005
(556 letters)
>mm_chr5_63670591_63671546
Length = 956
Score = 1000 bits (517), Expect = 0.0
Identities = 544/553 (98%), Gaps = 2/553 (0%)
Strand = Plus / Plus
Query: 5 gaattcctccttactg-tgctccaatgtttctctaatagtgtttaagtgctttgaggtca 63
|||||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 205 gaattcctccttac-gatgctccaatgtttctctaaaagtgtttaaatgctttgaggtca 263
Query: 64 atttataactcataacattatatctaagttaatgtggcttttggattttaacttcatggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atttataactcataacattatatctaagttaatgtggcttttggattttaacttcatggg 323
Query: 124 aaaaagttacattcaacttgtttataacgtcattaaaatgaagacttcattgtatctttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaaagttacattcaacttgtttataacgtcattaaaatgaagacttcattgtatctttc 383
Query: 184 atatttctgtagagggctgtctggtactatcaacatgtctgctgtcttcacaggactcta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atatttctgtagagggctgtctggtactatcaacatgtctgctgtcttcacaggactcta 443
Query: 244 cccttagtttcttgtgtctgttaggattttctctttatatatgggtatctgcacacacat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccttagtttcttgtgtctgttaggattttctctttatatatgggtatctgcacacacat 503
Query: 304 ttaagattgaccttggttagttttttatttaatatataaagtatgcttttgtatacataa 363
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 ttaagattgatcttggttagttttttatttaatatatgaagtatgcttttgtatacataa 563
Query: 364 aaaggcatcaagaaggcaatgtatagctcaatggtaaaagcacttttagcagacacaagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaggcatcaagaaggcaatgtatagctcaatggtaaaagcacttttagcagacacaagc 623
Query: 424 ccccagtcttcttctcaccccacaaggaaagatgtaaaaagagatgactttttgctggta 483
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 624 ccccagtcttcttctcaccccacaaggaaagatggaaaaagagatgactttttgctggta 683
Query: 484 tgatattaacaagctaaaaagtttagacattccatttcaagtactaattatgatgtgaag 543
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgatattaacaagctaaaaagtctagacattccatttcaagtactaattatgatgtgaag 743
Query: 544 caaggtgctaatg 556
|||||| ||||||
Sbjct: 744 caaggttctaatg 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_c23.g1 MSMg01no448_c23.g1 CHROMAT_FILE:
MSMg01no448_c23.g1 PHD_FILE: MSMg01no448_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:22 2005
(395 letters)
>mm_chr5_63822204_63823000
Length = 797
Score = 725 bits (375), Expect = 0.0
Identities = 391/397 (98%), Gaps = 2/397 (0%)
Strand = Plus / Minus
Query: 1 cttcgatggttttcagatgatccttcttgagaactaaa--acacacacacagaaagcaaa 58
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 597 cttcgatggttttcagatgatccttcttgagaactaaaacacacacacacagaaagcaaa 538
Query: 59 agagaggatcgaggtttaaagtctccatgttgattcttactccataaatgcattggaacg 118
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
Sbjct: 537 agagaggatcgaggtttaaagtctccatgttggttcttactccataaatgccttggaagg 478
Query: 119 acagatacagattttcctctgagtgctaaaaagcagggctggctgggatcctctctgtca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 acagatacagattttcctctgagtgctaaaaagcagggctggctgggatcctctctgtca 418
Query: 179 caagatctgaggtgagatctcagtttgggtaacaatataagaccagactttcaaagaaag 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 caagatctgaggtgagatctcagtttgggtaacaatataagaccagactttcaaagaaag 358
Query: 239 ctaagttttcagggaagccattctagtatttgttatttttataactttgatttggactca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctaagttttcagggaagccattctagtatttgttatttttataactttgatttggactca 298
Query: 299 ttgaatgacaaacttctgccgaatgagagattgcaatgtgatgattcatttcaggatttt 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 297 ttgaatgacaaacttctgccgaatgagagattgcaatgtggtgattcatttcaggatttt 238
Query: 359 cctgtatttgaatggcatcaaggcctcacttttatga 395
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 cctgtatttgaatggcatcaaggcctcacttttatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 797
Length adjustment: 9
Effective length of query: 386
Effective length of database: 788
Effective search space: 304168
Effective search space used: 304168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
