BAC Information

Click to search

BAC

Clone NameMSMg01-448F07
Chromosome5 (Build37)
Map Location 49,623,698 - 49,623,989
singlet/doubletsinglet
Overlap genenone
Upstream geneSlit2, 4933428G09Rik, Kcnip4, LOC100041668
Downstream geneLOC100041659, EG433885, LOC666223, Gpr125, EG637307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448F07.T7 (MSMg01no448_f07.b1)MSMg01-448F07.TJ (MSMg01no448_f07.g1)
ACCAG536571AG536572
length771747
length of high quality
(start - end)
292 (72 - 363)243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no448_f07.b1 PHD_FILE: MSMg01no448_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:34 2005CHROMAT_FILE: MSMg01no448_f07.g1 PHD_FILE: MSMg01no448_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATTCGCGTXXXXXXXXXXXXXXXXXXXXXXXTGCACATCCGCGGAATT
CTTAAGTGGACTCCCCAGAATCTCTGATAGAATACCAACAAGACATCTCA
TTGTCTGCCACACGGTGAGAGAAAAACATGCTCACCACAACCAGGGGTCT
ATATAAAATGTACAGCATTAAAGCTTTATTTTTCTATGGCTTGCTGGATT
CATTACAGTTTCTGAAGAGGAAAATGATTACATCATTAAGGATAAATCTT
TTTTTCTGAAATTTCAAATAAGCATTTCAGGAAAACGTTTCATTTTCATA
TCCTGGTAACAGTTCTATCATTATTTTTGGATTCAAGTCTAAATTTCTGT
TAGAAAATTTTGTATCCCAATTAAAGGCCACTCTGAGAGCCCTTGCTGAG
AATTTGCCTTGCCGTTGTCATCCTGGTCAGTAACTCTGAGCTTCCCTGAG
GGTGGGAAACAGTGTATGGATTTGTTGCATCTGACCACTTAACTCATAAC
ATCATTACTCTTGCCGAGAAATGACATTTGTAATGAATCCGCCCTATGTT
TTCCCATCTTGTTTGCACTTATAATTTCCTTGCTCCGGTCCGATAACCAA
TTCCCGTGAACATAGCACATTCTTTTAATTTTGCACTCGATTTCCTGGTT
ATCCTTTTCCGGTCTCACTCTCCCATTTCTCTATATTTTTTTTCCCAATG
CCTCTTACCTCATTTATCCCCCTTTCCCTGTCTTTTTCCCACCTCGCTCA
CTCTCCTTACCCACCCTTCTC
NNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXTTCATAAAGGGAGGT
GACCTATAGAAGTACCAAAAAAATTCCCTCTGAGGTGATTAAAAAGCAAG
GTCCTTGGTATATTGATTTTTAACAATGACTCTTATAAAGTATATTGCTT
TAGTCATAGAAAATTTAGTAATCTGTCTACTACAACTAAAAGCTGTGATG
AAAGTAAATTATTCTGAACATTTTATTAACTCTTTTTTTTGCAGTCCTAT
TAATACCTAACTCACTGGTGTCTTACATCTTAATTTTTTCAGTGTTGAAT
TTAAGGAATTTTCCTANNATCNTCTCAGACTCCAAATTCTCTGTTATGTA
TCAAAAATATATTTACTTGAGGTTGAGGTGATGGTTTCGGGATAAATTAC
TTTTCCAAGGCTCAAGAAGCTGAGTGCAGATTCCCAGAACCACAGCAAAA
GCTAGAAACACGCATGCATAATCGTCTTCATAGAATTCCAGAATGTCCCC
ACAAAGACATTGGAATCACAGGCAGATGAATTACCTCATCCGTGCTTGGA
GTCTTACCCACTACTTGGACTGCTGAGATGGGCTTCCGAACGAAAGGATT
TTCCCACACCTGCTGTAACCAGATGTCCAAGGTCACGCGGTGTTTTTTTT
TTTCTTTCCCCCTTTCTCGAAATAAGTGTGGGGGANAATTTTCAAATTAT
TTGGCCATCCTACCCTGGGACGATCACTTGCCAGGTTATCTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_f07.b1 MSMg01no448_f07.b1 CHROMAT_FILE:
MSMg01no448_f07.b1 PHD_FILE: MSMg01no448_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:34 2005
         (292 letters)



>mm_chr5_49623498_49624189
          Length = 692

 Score =  495 bits (256), Expect = e-144
 Identities = 283/292 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctgatagaataccaacaagacatctcattgtctgccacacggtgagagaaaaacatgc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ctctgatagaataccaagaagacatctcattgtctgccacacggtgagagaaaaacatgc 433

                                                                       
Query: 61  tcaccacaaccaggggtctatataaaatgtacagcattaaagctttatttttctatggct 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 432 tcaccacaaccaggggtctatataaaatgtacaacattaaagctttatttttctatggct 373

                                                                       
Query: 121 tgctggattcattacagtttctgaagaggaaaatgattacatcattaaggataaatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgctggattcattacagtttctgaagaggaaaatgattacatcattaaggataaatcttt 313

                                                                       
Query: 181 ttttctgaaatttcaaataagcatttcaggaaaacgtttcattttcatatcctggtaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 312 ttttctgaaatttcaaataagcatttcaggaaaacgtttcattttcatatcttggcaaca 253

                                                               
Query: 241 gttctatcattatttttggattcaagtctaaatttctgttagaaaattttgt 292
           |||||||||  |   |||||||||||||||||||||||||||||||||||||
Sbjct: 252 gttctatcaagaacattggattcaagtctaaatttctgttagaaaattttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)