BAC Information

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BAC

Clone NameMSMg01-448M06
Chromosome5 (Build37)
Map Location 144,377,581 - 144,377,851
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik
Downstream genePscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448M06.T7 (MSMg01no448_m06.b1)MSMg01-448M06.TJ (MSMg01no448_m06.g1)
ACCAG536900AG536901
length824515
length of high quality
(start - end)
276 (42 - 317)---
definitionCHROMAT_FILE: MSMg01no448_m06.b1 PHD_FILE: MSMg01no448_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:09 2005CHROMAT_FILE: MSMg01no448_m06.g1 PHD_FILE: MSMg01no448_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGGATCCGCGGAAT
TCCCAAGATACCTTACCTCAACCAGGTTATGTAAGCAGCGAGGATTTCTG
GGAAAGAGCTCTCTCCTAAGAGCTCCAGGGTCACAGCTTTTCCTGAGTCA
TGGTAGAGTGGGTTTCTGCTGACACAGCTGCCCTTGAGTCACTCAAACTC
ATGTAAATTCACTGGTTCACACTAGGCTAGACTTTGGGTGGAATCCTTTC
TGTCATCATTGCCTTACCAGGAAGTGAATAGTATTTTGTGTTGTTTTGGG
TTGTTTGCTCTTCCTGGTATTTTTTTTTCCCTTCAACTTACTCTAACGTG
GTTTTTTATTCCATTGATGATTCCCCTGCTTCCATTCATTCTGTGATTAG
CATCTTGGTACGCTGTTTAATATTGCTGCGCTCCGGGTCTTTATCTTCCG
AGGTCGAGGCTTGTCTGTTTTGCATAACTGCCTATTTATTTTTTAATTTC
CGCAATCTGCGCTTACTTCCATCCTTCCCATGGGCTTATCTTCCCATTTC
TCAATTCCTCATATTACCGCCCTCTTTCACTCCGTGTTTTCTTTTTTGCC
GTTAGCGCTAACCCGCCGTTTTTCGGCTTTTCCCCTCCATTTTTTATATA
TTCGTTGAGGCGCGCGCTCGCGTGGCGATTTATCCGCCCCTACCCTTATT
CGTTCCCTGGCCGACAAACGACCATTTTACTCTCCATTTCTTTCCCCCAC
TTTCTTATTTTTTGCACTTCAACGGCCATGTGTGACGCGTAAATTTATTT
GTTCTTTCTCTTTACCCGCACGCC
TTCCCCTGCCCGGGAGCCGGGGACAAAACCCCAAGGGGGGCCGCGGGATC
CCCGAGGGACGGTGAAGCAAGGGCGGCCCGGGCGCACAGAACACACCACC
CCACCCCCCACCCCCACAACCCCAGCACAGAGGGCGGGGAAAAGCTGGCG
ACCCGAAACAGGGCGAAAAAGACGGCAGGACGGGAGCAAAACGTCGGACC
GCGACACTCGCGGCGCACCCCCCCAGGACGCCCTAGCCCCCCAGCCCGCC
TCTCCCNCCTCTCTTNNTTTNTTTTCCCCCTGGTNNNNNTTTNNNNNNNC
CGGAGTACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXGCGAATTCTGGGATACAGAAACACCCGGGGGCCAGTGAA
CAGGACCCGTTGGCGCCTTGAAAGGTAAGGGCTGGAGACCCCTGGGGGTA
AACCCCACCAGAAAAAGTAAAGGAAAAAACCCCCCTTTCGGGGGAAAACC
CTGGGGCCAAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_m06.b1 MSMg01no448_m06.b1 CHROMAT_FILE:
MSMg01no448_m06.b1 PHD_FILE: MSMg01no448_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:09 2005
         (276 letters)



>mm_chr5_144377214_144377889
          Length = 676

 Score =  509 bits (263), Expect = e-149
 Identities = 269/271 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcccaagataccttacctcaaccaggttatgtaagcagcgaggatttctgggaaag 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gaattcccaagataccctacctcaaccaggttatgtaagcagcgaggatttctgggaaag 579

                                                                       
Query: 66  agctctctcctaagagctccagggtcacagcttttcctgagtcatggtagagtgggtttc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 agctctctcctaagagctccagggtcacagcttttcctgagtcatggtagagtgggtttc 519

                                                                       
Query: 126 tgctgacacagctgcccttgagtcactcaaactcatgtaaattcactggttcacactagg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgctgacacagctgcccttgagtcactcaaactcatgtaaattcactggttcacactagg 459

                                                                       
Query: 186 ctagactttgggtggaatcctttctgtcatcattgccttaccaggaagtgaatagtattt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctagactttgggtggaatcctttctgtcatcattgccttaccaggaagtgaatagtattt 399

                                          
Query: 246 tgtgttgttttgggttgtttgctcttcctgg 276
           ||||||||||||||||||||| |||||||||
Sbjct: 398 tgtgttgttttgggttgtttgttcttcctgg 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)