Query= MSMg01no449_a20.b1 MSMg01no449_a20.b1 CHROMAT_FILE:
MSMg01no449_a20.b1 PHD_FILE: MSMg01no449_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:33 2005
(653 letters)
>mm_chr5_12596456_12597508
Length = 1053
Score = 1172 bits (606), Expect = 0.0
Identities = 642/660 (97%), Gaps = 10/660 (1%)
Strand = Plus / Plus
Query: 4 ggaattccaaaaaggatctccacactgcacaagcttagactattcctcctctgtttccaa 63
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 204 ggaattccaaaaaggagctccacactgcacaagcttagactattcatcctctgtttccaa 263
Query: 64 gcttatcttatcagaagaaaacaatgcctgtgagaagtctattctggtatctcatgacaa 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcttatcttatcagaagaaaacgatgcctgtgagaagtctattctggtatctcatgacaa 323
Query: 124 catagcaacctggatacagttctagtttgtctctttctgtccaccccaaggacacgtttt 183
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacagcaacctggctacagttctagtttgtctctttctgtccaccccaaggacacgtttt 383
Query: 184 gatacaatatgaaaatgatggtgtaatagattataggagacaaaggaggttatgagtact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatacaatatgaaaatgatggtgtaatagattataggagacaaaggaggttatgagtact 443
Query: 244 taattcttactacactagtgagcaaatgcagatgttagtgagctgagcgtagggacacag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taattcttactacactagtgagcaaatgcagatgttagtgagctgagcgtagggacacag 503
Query: 304 gaacagagaatacctaaagatgtgtgacttaaagataatacaaaactgaacctagatcaa 363
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggacagagaatacctaaagatgtgtgacttaaagataatacaaaactgaacctagatcaa 563
Query: 364 caggagaaaattacttttatttaaggcaaacttaaagggaaaaaaaaggaaagaaggaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 caggagaaaattacttttatttaaggcaaacttaaagggaaaaaaaaggaaagaaggaat 623
Query: 424 cttatgtttcaaaattaaataaaacaatgatatttataaccaacaaatataaacatagac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttatgtttcaaaattaaataaaacaatgatatttataaccaacaaatataaacatagac 683
Query: 484 tcatcaatgaaaaaaagtgaagaattctttgtttggtggtttggtctctgggagctctgg 543
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcatcaattaaaaaaagtgaagaattctttgtttggtggtttggtctctgggagctctgg 743
Query: 544 gggtactggttgtttcatattgttgttcctcctttgggactgcaaaccccttcagctcct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gggtactggttgtttcatattgttgttcctcctttgggactgcaaaccccttcagctcct 803
Query: 604 tgggtcctttctctagatcctcc----------ctgtgctcagtacaatgcttgactgaa 653
|||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 804 tgggtcctttttctagatcctccattggggaccctgtgctcagtacaatgcttgactgaa 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_a20.g1 MSMg01no449_a20.g1 CHROMAT_FILE:
MSMg01no449_a20.g1 PHD_FILE: MSMg01no449_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:33 2005
(536 letters)
>mm_chr5_12769299_12770233
Length = 935
Score = 1006 bits (520), Expect = 0.0
Identities = 532/536 (99%), Gaps = 1/536 (0%)
Strand = Plus / Minus
Query: 1 tcagctccttctccagcaccatgtctgcctgaacagttatgcttcccgccatgatgataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tcagctccttctccagcaccatgtctgcctgaacagttatgcttcccgccatgatgataa 842
Query: 61 tggacttaaactctaaaaattttaaccagcaccaattaaatgttgtctctataagagttt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 841 tggacttaaactctaaaaattttaaccagcaccaattaaatattgtctctataagagttt 782
Query: 121 ccttggttatggtgctcttctcagcaataaaaccataactaacacaatatccccaagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ccttggttatggtgctcttctcagcaataaaaccataactaacacaatatccccaagaaa 722
Query: 181 ttactcttatcaatgccaataaagaaattataaagaaaatacccaaaatgttgaaaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttactcttatcaatgccaataaagaaattataaagaaaatacccaaaatgttgaaaggca 662
Query: 241 agttgccagaataaaactgtagacacagaagttcaaagatccagaaggcaacagcaggtt 300
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 661 agtttccagaataaaactgtagacacagtagttcaaagatccagaaggcaacagcaggtt 602
Query: 301 gtgtttgttttctcctttgatgatgatcaagttctccacccctttccttgtcatgctgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gtgtttgttttctcctttgatgatgatcaagttctccacccctttccttgtcatgctgac 542
Query: 361 cataaattcatagaatgtttatagagagcatgtcctctatgacaaaacaatgtgtcccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cataaattcatagaatgtttatagagagcatgtcctctatgacaaaacaatgtgtcccct 482
Query: 421 aaaccatgaggattgtttcttagagctgaatctcctgagcatgacaagatgggaaaggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaccatgaggattgtttcttagagctgaatctcctgagcatgacaagatgggaaaggaa 422
Query: 481 atgtcgaagaanaaaaaaaaaaacggaattttccaggggtcatatcaatgtaccag 536
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgtcgaagaa-aaaaaaaaaaacggaattttccaggggtcatatcaatgtaccag 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space: 486550
Effective search space used: 486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
