Query= MSMg01no449_c14.b1 MSMg01no449_c14.b1 CHROMAT_FILE:
MSMg01no449_c14.b1 PHD_FILE: MSMg01no449_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:41 2005
(652 letters)
>mm_chr5_23450174_23451225
Length = 1052
Score = 1176 bits (608), Expect = 0.0
Identities = 639/650 (98%), Gaps = 3/650 (0%)
Strand = Plus / Plus
Query: 4 gaattcttaagttt-tccaagtaatctcaggccctctgtagtataaaagctgcaaataga 62
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaagtttatacaagtaatctcaggccctctgtagtataaaagctgcaaataga 264
Query: 63 gctctgtaaaccttcatgtgtcatgggctagttgcactagaaacagaaagcaggcttgga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctctgtaaaccttcatgtgtcatgggctagttgcactagaaacagaaagcaggcttgga 324
Query: 123 acaaaattacgatcaaggaaaacatttcttctaggttggctgcaagactactgtctagta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaaaattacgatcaaggaaaacatttcttctaggttggctgcaagactactgtctagta 384
Query: 183 actaaagtcacaaactgggaatggacaatttattgtagctgcaggaacaaaaaaataaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actaaagtcacaaactgggaatggacaatttattgtagctgcaggaacaaaaaaataaag 444
Query: 243 tattaactgatttatctatacaaaaatttaaaatctttggaacacaaggcagctgacttg 302
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 445 tattaactgatttatctatacaaaaatttaaaaccaatggaacacaaggcagctgacttg 504
Query: 303 tctcttgacaaaaccatgctaacttatgacataaaaaatgttgctttaaacttataatga 362
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctcgtgacaaaaccatgctaacttatgacataaaaaatgttgctttaaacttataatga 564
Query: 363 acttatggggggctagtaacagagagtgaatgtttagtcagatactagtcttaatggaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acttatggggggctagtaacagagagtgaatgtttagtcagatactagtcttaatggaaa 624
Query: 423 gacatgtaaaaaaaaaaaagccagttactcaaagggtgcgaaagcacaccactgttctgt 482
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacatgcaaaaaaaaaa--gccagttactcaaagggtgcgaaagcacaccactgttctgt 682
Query: 483 ggaatagccatccttcttggaacagctaccagagtatctaaattggtggttctccacctt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggaatagccatccttcttggaacagctaccagagtatctaaattggtggttctccacctt 742
Query: 543 ccctgccagagaccagccctggccttcagcagaactgaggtgtgaaacagtatctgagga 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccctgccagagaccagccctggccttcagcagaactgaggtgtgaaacagtatctgagga 802
Query: 603 aggccaaagattgtttgagccagaagactccggaagattaactctctctt 652
|||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 803 aggccaaagattgtttgagccagaagactctggaagattaactctttctt 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_c14.g1 MSMg01no449_c14.g1 CHROMAT_FILE:
MSMg01no449_c14.g1 PHD_FILE: MSMg01no449_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:42 2005
(244 letters)
>mm_chr5_23618465_23619108
Length = 644
Score = 460 bits (238), Expect = e-134
Identities = 241/242 (99%)
Strand = Plus / Minus
Query: 1 catgcccttttttcttttgaatgaagtgaaaatcaaaatacgttctctctcaattccctc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 442 catgcccttttttcttttgaatgaagtgaaaatcaaaatacgttctctttcaattccctc 383
Query: 61 agaccttttacctctgctcccaatattaatgtgtgcatgtacatacacacagacagacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agaccttttacctctgctcccaatattaatgtgtgcatgtacatacacacagacagacaa 323
Query: 121 agagagagaaatagaacattccagtagatttatagtttctttttaaagcaacagaatcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agagagagaaatagaacattccagtagatttatagtttctttttaaagcaacagaatcta 263
Query: 181 ttttcaaagggtcttaatctcatttgggaagaggaagggaccagggagggatggagggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttttcaaagggtcttaatctcatttgggaagaggaagggaccagggagggatggagggag 203
Query: 241 ac 242
||
Sbjct: 202 ac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
