BAC Information

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BAC

Clone NameMSMg01-449D18
Chromosome5 (Build37)
Map Location 144,983,257 - 144,983,411
singlet/doubletsinglet
Overlap gene2210010N04Rik
Upstream geneSpdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8
Downstream geneBri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449D18.T7 (MSMg01no449_d18.b1)MSMg01-449D18.TJ (MSMg01no449_d18.g1)
ACCAG537256AG537257
length808738
length of high quality
(start - end)
134 (90 - 223)155 (95 - 249)
definitionCHROMAT_FILE: MSMg01no449_d18.b1 PHD_FILE: MSMg01no449_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:48 2005CHROMAT_FILE: MSMg01no449_d18.g1 PHD_FILE: MSMg01no449_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCGTAG
CGGGCGCGGAATTCACTCCAAAATTGCAAGAAAAGGGGAAAAAGACAAAG
AAAGACCAAGCTGGTCATCGTGTGCACACTTGCAATCTTGGTACTCAGAA
AGAAGAAGAGGAGGAGGAGGAGAAGGAAGAGGAGGACAAGGGGGGGAGGA
GAAGGGGAAGAGGAAGAAGAAGAATGTTAAGGAGGAGGACGAGGGGGAGG
AAGAGAGGGGGTGGTTTTTTTTTGGGGAGGGGATGAGGGGTAGATAAGGG
ATGGGGAGGGGGAAAGGGGAAGAAGAGAGGATTTGGCTGGGTTTGACNAG
AAAAAGGGGAGAGAGGGAGAAGATTTTTTTCTCCCCCCCCCGTTGCTGGG
GGGCGGGTTTTGTGCGCCCTCTTAGTCTGCGCCCCCTCTTTTTTTTTTTT
TTTTTGTTGTTTCCAGCGACCGGCGTATATTATTGGTATGTTTGAGTTAC
CTTGTGCTGGCTTGGTTCTGGGGTGGGCGCTCCGCATGTTATTGCATATA
TTCTTGCCCTTCTTCGGCTCTCTCTTTTTCTTTGCGTAGTCGAGCTATTA
TACCTCGTTTCTTTTCCGTGTCACCCGCTGGTCTCTATTTCTCTGTCTTG
CTTTCCCTTTTTCCTCGTATATATCGCCCCTCTCTCTTTTCCCCGCCGAT
TTCTTTTTTTTTTTTTTCATTTTCTCGTACTTGCCGCTTTCTCTGTCGCC
CCTTTCTATATCCATGCCGTGCTCTTTTCCGCCTGCTTATCCCTCCCCTC
TCTTCTTN
NNAAACATGAAGTGGTAGCCTGGGGGCGCCTGGCTTCGNCACTAGGNGAA
CNANAGAAGGATTGCGAAATAAGGACCTTCGGAAGAGAGNCAGGGCTCTT
AACCACTGAGCCATTTCTCCCGCCCTGTTTTCTTTTTGTTGCTGTTGTTT
TTGTTTTTAATTTCTTTGTGTGTGCAGATGCACAAGCGGCTGTGGAAGTC
AGAGGTCAACCTGCACCATCCACCTTGTTTTTTTAAAGCTGGGATTTCTC
TTTTTCCCGGGGCCCACTAATTAGGCTAGGCTAACCAACCAGGAACCCCA
GGGATCCGTCCACCTCTTCATCGCTATGGNTATAAGCAAGNGCCATTGGG
GCTCACTTATTAGTATCTTTACGTTTAGTGTGTGTGTGTTGCGTGCGTGC
GCACACGCATGCCCCCGTGGCTCACGTTTGGAGATGAGAAGACAGCTTGC
TGGAATGTGTGCTCTCCTTCCATCAGGTGGATCCCAGGGATCGAACTTAG
GTTGATCAGCTCCACAGCCACTATCTTCACCCGATCAGCCATGTAGCTGA
CCATGCCCCCATACTCACTTAAAAAGAAAAACAACTACAACCTCAACTCG
AAAACATGCTTTAAACTTGGCCTCCTCCTTCTCAAACCGCCAGCACTCTT
ACCATTTTTTTTTTTTTTTTACACCCCTTTGCGCGCTTCTAGCCTTCGTC
TCTACATTAAATTCTCTTCCCAAGCTCCTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_d18.g1 MSMg01no449_d18.g1 CHROMAT_FILE:
MSMg01no449_d18.g1 PHD_FILE: MSMg01no449_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:48 2005
         (155 letters)



>mm_chr5_144983057_144983611
          Length = 555

 Score =  277 bits (143), Expect = 3e-79
 Identities = 152/155 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcttaaccactgagccatttctcccgccctgttttctttttgttgctgttgtttttgt 60
           |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 355 gctcttaaccactgagccatttctccagccctgttttcttgttgttgctgttgtttttgt 296

                                                                       
Query: 61  ttttaatttctttgtgtgtgcagatgcacaagcggctgtggaagtcagaggtcaacctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttttaatttctttgtgtgtgcagatgcacaagcggctgtggaagtcagaggtcaacctgc 236

                                              
Query: 121 accatccaccttgtttttttaaagctgggatttct 155
           ||||||||| |||||||||||||||||||||||||
Sbjct: 235 accatccactttgtttttttaaagctgggatttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)