BAC Information

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BAC

Clone NameMSMg01-449G23
Chromosome5 (Build37)
Map Location 97,386,531 - 97,386,785
singlet/doubletsinglet
Overlap genenone
Upstream geneCxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266
Downstream geneLOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449G23.T7 (MSMg01no449_g23.b1)MSMg01-449G23.TJ (MSMg01no449_g23.g1)
ACCAG537408AG537409
length693745
length of high quality
(start - end)
---254 (83 - 336)
definitionCHROMAT_FILE: MSMg01no449_g23.b1 PHD_FILE: MSMg01no449_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:03 2005CHROMAT_FILE: MSMg01no449_g23.g1 PHD_FILE: MSMg01no449_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCTCCTCTCCTTGGGNAAAGGGAGGTTCTCCATCTATXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTCAAACGAATT
ACAAATAGCTAGTANATACTTTTTTAAAGGGGTCACTCCACATTGTTAAC
CCATAACTTGAGGGGGGGGAGTAAAAAATCAGGAATAACCCCCTGGGGGA
AAACCAAAGGGGGGAAGGTTCCCTCCAAAAAGCTTAAAAAAAAAATTTAT
ATTGGACCCCCGCGCTCAAAATTTCCGGGGGGGAAAAAAACCCCCAAAGG
GAAACACCGGGGGTTCCCCCCCAAAAGGAGAAACCCCCGCGAAAAAAACC
CCGGGGGGCCCCCTTTTGGGGNAAAAAAAAAACAGAGGGACTTCTTTAAA
AAAAAAAGACCCCCCCCTTCTGTGTTGGTGAAAAAAAGGTTTGTTTTTTT
TTTAAAAAGGGGGGGGGAAGGAGATCTTTTTTTTTTTAAAAAAACCCTCT
TTTTGTTAATTGTGTTGTTTNACCAATAAACAAAAAAACACCCCCCCCCC
CATTATATTTTGTGCGTGGGTTTTCCCCTCCAATAATAAAATAGGTTTTG
GTGTTGGGGGGGGTGGCCCCCACACACACAAAAAAAAAAAAAAAAAAACA
TTTTTCCCCTCCCCCCACTCCCCAAAATTAAGATTATGTTTGT
CCGTATTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTCAGGAATTCACTCCGTAGGTCAGCC
TGGCCTTGAGCTCATAAGATCTTCCTGACTCTGCCTCTTGAGTGCTGGGA
TTAGAGGTACGTGTTTTCCATGCCTAGCTAGCAGGCAGTTTATTTTAGAA
AGTCTCAACAAATGCTGACGTTTGTTTGTTTGCTTTTTTTGTTCTTGTTG
TTCTATTTGGTTTTAAAATTGCATTTATTTATTTGAGGAGAGGTGAGATA
CATGCCACATGTAGAAGTCAGAGACAACTGTGTTTTTTTTTCTCTGCCAG
TTCACCAAGTTCACCAAGTTCTCTAAGAGCACACTTAGGTCATAAGGCTT
TGGAGCAAGCGCCTTCAGCCACAGAGCCATCCAGGTGGCCACTGGGATCG
GTTTTTTTTTTTTTTAATGTTATTAAGTAACGGTTAAGGGGCCCTTTAAA
ATTTTTTAAAATTTAAAATAAACGGTTTAAAAAGTTTTTTTTCCCTTTTG
GGGGGGGGTGGGTCTGGAATTTTCTGAGCCCACTGCACATCTCTGCTCTT
TATCTATCTTCCGTCCTCTCATCCCCCTCCTTTTTTACCCTTACCCTTTA
TCCCTAACTCACCTCCCTTTGTCCGCTGTGTTTTTTTTTTTTATTTTTAT
GATACCGCCTCTTACTTTTACCCTCTCTTTTCTTTATTCCGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_g23.g1 MSMg01no449_g23.g1 CHROMAT_FILE:
MSMg01no449_g23.g1 PHD_FILE: MSMg01no449_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:04 2005
         (254 letters)



>mm_chr5_97386331_97386989
          Length = 659

 Score =  462 bits (239), Expect = e-135
 Identities = 249/255 (97%), Gaps = 5/255 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactccgtaggtcagcctggccttgagctcataagatcttcctgactctgcctcttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactccgtaggtcagcctggccttgagctcataagatcttcctgactctgcctcttgag 260

                                                                       
Query: 61  tgctgggattagaggtacgtgttttccatgcctagctagcaggcagtttattttagaaag 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgggattagaggtacgagttttccatgcctagctagcaggcagtttattttagaaag 320

                                                                       
Query: 121 tctcaacaaatgctgacgtttgtttgtttgctttttttgttcttgttgttctatttggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcaacaaatgctgacgtttgtttgtttgctttttttgttcttgttgttctatttggtt 380

                                                                       
Query: 181 ttaaaattgcatttatttatttgaggagaggtgagatacatgcca-----catgtagaag 235
           |||||||||||||||||||||||||||||||||||||||||||||     ||||||||||
Sbjct: 381 ttaaaattgcatttatttatttgaggagaggtgagatacatgccatgtcacatgtagaag 440

                          
Query: 236 tcagagacaactgtg 250
           |||||||||||||||
Sbjct: 441 tcagagacaactgtg 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 659
Length adjustment: 9
Effective length of query: 245
Effective length of database: 650
Effective search space:   159250
Effective search space used:   159250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)