Query= MSMg01no449_l19.b1 MSMg01no449_l19.b1 CHROMAT_FILE:
MSMg01no449_l19.b1 PHD_FILE: MSMg01no449_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:26 2005
(594 letters)
>mm_chr5_107145304_107146297
Length = 994
Score = 1112 bits (575), Expect = 0.0
Identities = 588/593 (99%), Gaps = 4/593 (0%)
Strand = Plus / Minus
Query: 4 ggaattcacgactgttctctcggctgcctagtgatttggaagccagcctggaacacagga 63
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ggaattcacgactg-tc-cttggctgcctagtgatttggaagccagcctggaacacagga 737
Query: 64 gacctatctgaacaaatcaatacagttgagtctgtcctctgtctaaggaatggttggggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gacctatctgaacaaatcaatacagttgagtctgtcctctgtctaaggaatggttggggg 677
Query: 124 tttagtgtgacaagaaggaacatcttacataggcttttctggaggggaaaagaggcatga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tttagtgtgacaagaaggaacatcttacataggcttttctggaggggaaaagaggcatga 617
Query: 184 ttacaataaataaacaatgacaaattattgagtagttaaaagctttgagatcttatttga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttacaataaataaacaatgacaaattattgagtagttaaaagctttgagatcttatttga 557
Query: 244 atacattctcattagtcagtttcaaagcattagccccttcttggcattttgacatgggct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atacattctcattagtcagtttcaaagcattagccccttcttggcattttgacatgggct 497
Query: 304 ctgctgccctccttacaacacacttgatttccctacttcttcagttcagcctttcttctg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ctgctgccctccttacaacacacttgatttccctacttcttcagttcagcctttcttctg 437
Query: 364 ctcatcttctaagcccctcctctttgacctctataactacttctccctcagcagactggc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctcatcttctaagcccctcctctttgacctctataactacttctccctcagcagactggc 377
Query: 424 cttcattcacagaccaccctcctgatgaacaatgtaccttgtaaggtcagacctagctcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cttcattcacagaccaccctcctgatgaacaatgtaccttgtaaggtcagacctagctcc 317
Query: 484 ctgcctctccctacagcccctcctgagtgccataagacatgcctgtgggtacgatctatg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctgcctctccctacagcccctcctgagtgccataagacatgcctgtgggtacgatctatg 257
Query: 544 ggctgatagctcccaaatttctgtctccatccc--gagtcacagacctgtgta 594
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 256 ggctgatagctcccaaatttctgtctccatccctagagtcacagacctgtgta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_l19.g1 MSMg01no449_l19.g1 CHROMAT_FILE:
MSMg01no449_l19.g1 PHD_FILE: MSMg01no449_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:26 2005
(518 letters)
>mm_chr5_107005912_107006829
Length = 918
Score = 957 bits (495), Expect = 0.0
Identities = 512/523 (97%), Gaps = 10/523 (1%)
Strand = Plus / Plus
Query: 1 ttccaggccagcctgggatgacatattttctgtgttggggtgggggccaagaatgaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccaggccagcctgggatgacatattttctgtgttggggtgggggccaagaatgaacaa 260
Query: 61 acaactaaacagctacttgcaaaagaaagcttcagtggaaaagtctgggatatttcctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaactaaacagctacttgcaaaagaaagcttcagtggaaaagtctgggatatttcctgg 320
Query: 121 gaatgtctcctctcctttctttcccagttctaggatttcttcttcagagttatcacctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatgtctcctctcctttctttcccagttctaggatttcttcttcagagttatcacctgc 380
Query: 181 tatacgcccacagcaccttagccaaggtcagtaacagctactatgctggggagaggaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatacgcccacagcaccttagccaaggtcagtaacagctactatgctggggagaggaaga 440
Query: 241 gcctataggacgcttttta-----gagcattctgggcaggagccacagtggaagacagca 295
||||||||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct: 441 gcctataggacgc-----aaagcagagcattctgggcaggagccacagtggaaggcagca 495
Query: 296 tgggccagaggcccttgtcccagatacccagctctgagaatgagactcggcttcctgatg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgggccagaggcccttgtcccagatacccagctctgagaatgagactcggcttcctgatg 555
Query: 356 agcactaaattaccaccattgctaaactctcccttaatagacttgtaaagatctgctcag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agcactaaattaccaccattgctaaactctcccttaatagacttgtaaagatctgctcag 615
Query: 416 taccttcccccttcatgtagaatttgtaatcaagagcccaattttgtcatttggaaatac 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 taccttcccccttcatgtagaatttgtaatcaagagcccaattttgtcatttggaaatac 675
Query: 476 taattatctaatcacggcatgccgcataacgtacttgtctgcc 518
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taattatctaatcacggcatgccgcataacgtacttgtctgcc 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
