BAC Information

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BAC

Clone NameMSMg01-450C20
Chromosome5 (Build37)
Map Location 122,576,614 - 122,576,783
singlet/doubletsinglet
Overlap geneCcdc63
Upstream genePtpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2
Downstream genePpp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450C20.T7 (MSMg01no450_c20.b1)MSMg01-450C20.TJ (MSMg01no450_c20.g1)
ACCAG537969AG537970
length811909
length of high quality
(start - end)
170 (70 - 239)39 (75 - 113)
definitionCHROMAT_FILE: MSMg01no450_c20.b1 PHD_FILE: MSMg01no450_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:00 2005CHROMAT_FILE: MSMg01no450_c20.g1 PHD_FILE: MSMg01no450_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXGTGCAAGACGATCCGCNGGAA
TCACTGTGTACCCCTTGAAGTCACAGAGATCTACTTGTCTCTGCCTCCTT
CCGTGCCAGGAGTATAGGTGTGTGTCATCATACCCTGCCATCCTTACCCT
CTTTTTGTTTCTTTGTAATACTTTGTTTTTCACGGAGTGTTCATGCCTGT
GTCTGTATATGTGGCGGCAGAAGTACCCATGAAACCCAGCAGAGGTCAGT
GGATCCCCTGCAACTGGATTGTTGAGAGGACTGCTGTAGATGCTGGGAAC
CAAACTCAAGTCCTCCATAATTCCCCTGGGAACGGAACTTATGACCTTGT
GCACACTGGTCACGTCCTCTAACACTGAACTGCGCTTCCAATCCCTTACT
TATCTATCTTAAACCAATATGTTGCCCACGTAAGACTGCAAAGCATCAAA
TGCCACTAAATTCAAATGTATTTTCTCCTCCTCCTCCTCCTCCTTCTCTC
TCCTCTCCTTTTCTTTTTCTCTTACCACTTATTTCTTTTCTTCTTCCCTA
CCCTTCCTTCTTCCTTTTTCTTTCTCATCCCCTCTCCCCCTTCCCCCTTC
CTTCTATTTCTTTCCCTTTCTCCCTTCTTTCTCCCTTCCTTCCTTTTTCC
TTCCGTTTCTTTCCCCATTTTTCCTCCTTTTTTCCTCCTTCCCTCCTCCT
TCTTATCTTTACACCTTCTCCTCTTTTTTCCCCCCTTACTTTTCTTTTTT
CCCTTTCTCCTTTTCCCTTCTCCTCCCCTTCCTTTTTCCTTCTTTTCCCT
TTCCCCCTCCC
ACTGCTGTGTGAGGCCTGGCGGCCGCCTGGTTCAACACCGGAGGNGACCT
ATAGAAGGTTTCAGACATTGCTGGTTCAGAGCTATGGTCTCAGTGTGGGG
AGGGGATAGCGAGTGGGGGTGGGGGGGAAGTTTGCCCGTGTCGGATGGTC
CTCGTGTCCTTTTCTTCGGCGGTGCCTCCCTTCTGCTGCTTGCGGCGCCG
CATCCGTCGCTCTCTTCCCCCTGTTTGTTCCTTTTCGTCTTCTTGTCTTT
TTCTTTCTCGCCCGACCCGCCGTGGTGGTCTTGCGATTCCGGCCGCCTTC
CCGTCTTCCCTGCGTTTTTTTTTTTTTCTCTCTCGCGTCCGTGTGCTCTT
TCCCCTCCCCTTTCTTTTTCTCCGTACCCCCCCTGTGACCGCCCCTTCTT
TCCCCCCCCCCCTTCCCCTTTTTTCCCCCCCCCCCCCCTTTCCTTTTCCT
CTTTTTTTTCCTCCTTCTTTGCCCCCCCCCCCTTCTCCCCCCCCCCTTCC
CTCCTTTACTCCCTCCGCCTTCCGGGTTTTTGTGGTGCCTCCGCCTTTCT
TCTTCTTCTCGCCCTCCCCCCTTTTTTCGTCCTGTTTTCCCTCCCCTCCT
ACCCCCCCGTCCTTTATTCTACCTCCCGTTTCTTCGCCATACTCATTCTT
TTTCCTCTCCCCCCTTCCGCCCCTCTCTCTCTCTCGTCCTTTATCTTTCC
TCCCTCCGCCTATATCCCCCTCTCTGCTCCGCACCCCTTCGCTCGTCGCT
CCTTTCCCCTACTCGCTCCTGTTTTTTTATTCCCTCTCTCTGCCTCGCCC
CTCTCTCCTCTTTTTTCTTACTCCCCCCTCTCCCCCACCTCCCTTGCCCT
CCTCCCCCGCGCCATCCGCCCTCTCTCTCTCCCCGTTACCGTTTCCCGCT
CTTCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_c20.b1 MSMg01no450_c20.b1 CHROMAT_FILE:
MSMg01no450_c20.b1 PHD_FILE: MSMg01no450_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:00 2005
         (170 letters)



>mm_chr5_122576345_122576914
          Length = 570

 Score =  306 bits (158), Expect = 6e-88
 Identities = 167/170 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcacagagatctacttgtctctgcctccttccgtgccaggagtataggtgtgtgtcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 439 gtcacagagatctacttgtctctgcctccttccgtgccaggagtaaaggtgtgtgttatc 380

                                                                       
Query: 61  ataccctgccatccttaccctctttttgtttctttgtaatactttgtttttcacggagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ataccctgccatccttaccctctttttgtttctttgtaatactttgtttttcacggagtg 320

                                                             
Query: 121 ttcatgcctgtgtctgtatatgtggcggcagaagtacccatgaaacccag 170
           ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 319 ttcatgcctgtgtctgtatatgtgggggcagaagtacccatgaaacccag 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)