BAC Information

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BAC

Clone NameMSMg01-451B14
Chromosome5 (Build37)
Map Location 140,900,190 - 141,081,012
singlet/doubletdoublet
Overlap geneEif3s9, LOC100041291, EG231836, Chst12, Grifin
Upstream gene3110082I17Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8
Downstream geneLfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11, LOC623466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451B14.T7 (MSMg01no451_b14.b1)MSMg01-451B14.TJ (MSMg01no451_b14.g1)
ACCAG538669AG538670
length768754
length of high quality
(start - end)		604 (64 - 667)567 (76 - 642)
definitionCHROMAT_FILE: MSMg01no451_b14.b1 PHD_FILE: MSMg01no451_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:14 2005CHROMAT_FILE: MSMg01no451_b14.g1 PHD_FILE: MSMg01no451_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,900,190 - 140,900,790)(141,080,446 - 141,081,012)
sequence
NNTTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAAATCCAGATTTCTGCCTGCCCGAGTCCTGGGATTGGAAGCATGGGCC
ATGGCTTGTGGGTAGCAAGCACTTTCCCCACTCAGCCTCTGTCCAGCCCA
CCTTTCACTTCTGAGAATGCAGCGGCACAAAGGACATGTGTCAACATCTG
TATGCTGAAGTTTCTTTCCTTTTCAGTCCCCTTGAACAGGAGTTAAAGAC
TGGAGTTACAGTGAGCTGCCAAGTGTGGGTACTGGGAACAAACAGAACTC
AGATTCTCTGAAGGAGAGAGAGTTGGTTTTTCCGAACATGGTTTCTCTGT
AGAGACCAGGTTATGGCCTTGAACTCATATTCACCTGCCTCTGCCTCCCA
AGTGCTGGGATTAAAGGCACTGCCATCAACTGTGGTACCTGTTCTTAATG
CTGGTAGGAGGCTGGCCTTGCCTTGAGGATGACCTTAAACTCTAGCTCCT
CTTGCATTCCCCTCCCAAGTGCTGGGGTTGTAGACGTGTGTAACCACTCC
TGAAAAGATTGAAAAAAAATGACAGTAATAGTGGCTAGAAATTTGTGCAA
TTAGCCATTCTTTTAAGTTTGTCTTAGAGCAGTATTGGAGATTGAACCCA
GGGCTACTTCTGTGTTTAGGTTGGGGTGCTGCCTTTATGTTATATCTGTG
GNCCTTCCATTANTGATGGTTGTGAGCCACCATGTGGNTGCTGGGAATTG
AACTCCTGACCTTTGGAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGACTCTCCTGGTATCCACATGTC
TTGTGGTGGTCCTACCCCGTGTCCCCCCACCCCGCACATACAATGTCTTC
ATTTCCCAATAGCTCAAGTCCCCTAATCACCCTAACTTTCTGCATGGCTT
CCATTTAAACCAAAGGGAAGATACCTTCGTGGGCATTTATCAAGTCTCTG
ATGGCAGGAGAGGAAACAAACTACCTATGCCTTCCTTCCATACCCACCTG
ACCAAGTCATAGCTGGTTGTCAGTCTTGGTGCGCCTTCATCCCAAGCCTG
GGACCATGTCAAGCCGCTACCACCAAGTCCTCATGTTCCCCATTGTAAAG
AAAGCAACCTGATGCCCAGAGAGGGGCTGGTGCAGTGTCCATGCCTGCCA
CAGAGGAGCCATGCAGGGGAGACCCGGTCGGCCATGGAGTAAGGAACCAA
CCAGCTCTGACTGTGGTGGCTGGACAGGGAACGGCAGGTCAAAGCCTTAC
CGCATTCTTGTGGGGGCTGCAGGCTCTGGCAAGAGTGATTCAGTTTCTTC
GCTGTCAGAAGATTGGAATTTCATGGTTCCTCCTTGAGGTCTGAAAACCA
GAGGGAGACATAACCAGCTCGCCTCTCCCTATTGCTTCCTGCACTGAGCT
CATGGGGAACTCCCTTCCTCTGGACCCATGGACTCCCTGCAGAACCCACT
GGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_b14.b1 MSMg01no451_b14.b1 CHROMAT_FILE:
MSMg01no451_b14.b1 PHD_FILE: MSMg01no451_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:14 2005
         (604 letters)



>mm_chr5_140899990_140900993
          Length = 1004

 Score = 1131 bits (585), Expect = 0.0
 Identities = 597/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcctgcccgagtcctgggattggaagcatgggccatggcttgtgggtagcaagcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcctgcccgagtcctgggattggaagcatgggccatggcttgtgggtagcaagcact 260

                                                                       
Query: 61  ttccccactcagcctctgtccagcccacctttcacttctgagaatgcagcggcacaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccccactcagcctctgtccagcccacctttcacttctgagaatgcagcggcacaaagg 320

                                                                       
Query: 121 acatgtgtcaacatctgtatgctgaagtttctttccttttcagtccccttgaacaggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgtgtcaacatctgtatgctgaagtttctttccttttcagtccccttgaacaggagt 380

                                                                       
Query: 181 taaagactggagttacagtgagctgccaagtgtgggtactgggaacaaacagaactcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 taaagactggagttacagtgagctgccaagtgtgggtactgggaacaaacagaactcagg 440

                                                                       
Query: 241 ttctctgaaggagagagagttggtttttccgaacatggtttctctgtagagaccaggtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctctgaaggagagagagttggtttttccgaacatggtttctctgtagagaccaggtta 500

                                                                       
Query: 301 tggccttgaactcatattcacctgcctctgcctcccaagtgctgggattaaaggcactgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggccttgaactcatattcacctgcctctgcctcccaagtgctgggattaaaggcactgc 560

                                                                       
Query: 361 catcaactgtggtacctgttcttaatgctggtaggaggctggccttgccttgaggatgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcaactgtggtacctgttcttaatgctggtaggaggctggccttgccttgaggatgac 620

                                                                       
Query: 421 cttaaactctagctcctcttgcattcccctcccaagtgctggggttgtagacgtgtgtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 cttaaactctagctcctcttgcattcccctcccaagtgctggggttgcagacgtgtgtaa 680

                                                                       
Query: 481 ccactcctgaaaagattgaaaaaaaatgacagtaatagtggctagaaatttgtgcaatta 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 ccactcctgaaaagattgaaaaaaaatgacagtaatagtggctagagatttgtgcaatta 740

                                                                       
Query: 541 gccattcttttaagtttgtcttagagcagtattggagattgaacccagggctacttctgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 gccattcttttaagtttgtcttagagcagtattggagattgaacccagggctactcctgt 800

            
Query: 601 g 601
           |
Sbjct: 801 g 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no451_b14.g1 MSMg01no451_b14.g1 CHROMAT_FILE:
MSMg01no451_b14.g1 PHD_FILE: MSMg01no451_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:14 2005
         (567 letters)



>mm_chr5_141080246_141081212
          Length = 967

 Score = 1073 bits (555), Expect = 0.0
 Identities = 564/567 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagactctcctggtatccacatgtcttgtggtggtcctaccccgtgtccccccaccccgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aagactctcctggtatccacatgtcttgtggtggtcctaccccgtgtccccccaccccgc 708

                                                                       
Query: 61  acatacaatgtcttcatttcccaatagctcaagtcccctaatcaccctaactttctgcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 acatacaatgtcttcatttcccaatagctcaagtcccctaatcaccctaactttctgcat 648

                                                                       
Query: 121 ggcttccatttaaaccaaagggaagataccttcgtgggcatttatcaagtctctgatggc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 647 ggcttccatttaaaccaaagggaagataccttcgtgggcatttatcaagtctctgacggc 588

                                                                       
Query: 181 aggagaggaaacaaactacctatgccttccttccatacccacctgaccaagtcatagctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aggagaggaaacaaactacctatgccttccttccatacccacctgaccaagtcatagctg 528

                                                                       
Query: 241 gttgtcagtcttggtgcgccttcatcccaagcctgggaccatgtcaagccgctaccacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gttgtcagtcttggtgcgccttcatcccaagcctgggaccatgtcaagccgctaccacca 468

                                                                       
Query: 301 agtcctcatgttccccattgtaaagaaagcaacctgatgcccagagaggggctggtgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 agtcctcatgttccccattgtaaagaaagcaacctgatgcccagagaggggctggtgcag 408

                                                                       
Query: 361 tgtccatgcctgccacagaggagccatgcaggggagacccggtcggccatggagtaagga 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 407 tgtccatgcctgccacagaggagccatgcaggggagaccgggtcggccatggagtaagga 348

                                                                       
Query: 421 accaaccagctctgactgtggtggctggacagggaacggcaggtcaaagccttaccgcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 accaaccagctctgactgtggtggctggacagggaacggcaggtcaaagccttaccgcat 288

                                                                       
Query: 481 tcttgtgggggctgcaggctctggcaagagtgattcagtttcttcgctgtcagaagattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcttgtgggggctgcaggctctggcaagagtgattcagtttcttcgctgtcagaagattg 228

                                      
Query: 541 gaatttcatggttcctccttgaggtct 567
           ||||||| |||||||||||||||||||
Sbjct: 227 gaatttcgtggttcctccttgaggtct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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