BAC Information

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BAC

Clone NameMSMg01-451B19
Chromosome5 (Build37)
Map Location 87,203,131 - 87,203,772
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
Downstream geneA730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451B19.T7 (MSMg01no451_b19.b1)MSMg01-451B19.TJ (MSMg01no451_b19.g1)
ACCAG538679AG538680
length738769
length of high quality
(start - end)		452 (47 - 498)638 (75 - 712)
definitionCHROMAT_FILE: MSMg01no451_b19.b1 PHD_FILE: MSMg01no451_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:15 2005CHROMAT_FILE: MSMg01no451_b19.g1 PHD_FILE: MSMg01no451_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTTGTCGAAAATCAAG
TGANCATAGGTTGTGGGGGGTCATTTTCTGAATCTTCAATTCCATTTCAA
TGGGCCAACTTGGCCGGGCCCCAAAACCAAAACCCTGGGAGTTTTTTTAC
ACATTGGGCTCGTGAAAAAAACTTTTTAGGCGGGGGGGGGGGATTCCCCC
CCAAAATCTTTTTTTTCTTTTTAAAAAATTTTTTTTTT

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGTATCCCTTCACGGCTCTCTCTCT
CTCTCTCTCTCCCTCTCTCTCTCTCTCTTCCTTTTTAAAAGACTTATTTA
TTGTCATGTATATGAGTAATGTGAGCCACCCACCATGCAGTTGCTGATCT
TCTGAGACAATAGGAGGAAAGGGTGAAACCAAATGATGATTCAGTGAGAG
AGCATAAGAATTACTGTAGCGAGGGATTATAAATCTAGTTTTAGAGCCAG
TGAAATGGCTCAGTGGGGGTGGAAAATGCTTGTCACACAAGGCAGGTGAA
CAGAGTCATCAGGGTGGAAGAAAAGAACAGACTTCCACAAATTGTGCGAT
TGTCCTCTGATCTCTGAACATGTGCTATAGCCCAAGCACCCAGCACAATA
CTAAATAAATATATAAATATAAACAAATAAAAATATAGGTTGAATTTGAG
GGGAGACAAATCTGTAGTACTGGTTCAACCCTGTACCGAAGGAATAGCTG
CATCGGATGAGAATGTCTCTGCGTGAAGGTCTAAAAACCATGATGCAGTG
GAATGGCAGTGCAGTGTAAAAGATGGCATTGTCCCAGTCTCTCATCTTTG
CTTTATGTTTCCCATAATGAAGTATACCTCCACCTCTTTCGGATCTACTA
GTCTCCTATACACTGAAAGATAAAGGCAATTTTTTCTCTAATTAGNTAAT
TTTGATGTTGATACTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_b19.g1 MSMg01no451_b19.g1 CHROMAT_FILE:
MSMg01no451_b19.g1 PHD_FILE: MSMg01no451_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:15 2005
         (638 letters)



>mm_chr5_87202935_87203972
          Length = 1038

 Score = 1210 bits (626), Expect = 0.0
 Identities = 637/642 (99%), Gaps = 4/642 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtatcccttcacggctctctctctctctctctctc---c-ctctctctctctctcttc 56
           |||||||||||||||||||||||||||||||||||||   | ||||||||||||||||||
Sbjct: 197 ctgtatcccttcacggctctctctctctctctctctctctctctctctctctctctcttc 256

                                                                       
Query: 57  ctttttaaaagacttatttattgtcatgtatatgagtaatgtgagccacccaccatgcag 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctttttaaaagacttatttattgtcatgtatatgagtaatgtgagccacccaccatgcag 316

                                                                       
Query: 117 ttgctgatcttctgagacaataggaggaaagggtgaaaccaaatgatgattcagtgagag 176
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgctggtcttctgagacaataggaggaaagggtgaaaccaaatgatgattcagtgagag 376

                                                                       
Query: 177 agcataagaattactgtagcgagggattataaatctagttttagagccagtgaaatggct 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agcataagaattactgtagcgagggattataaatctagttttagagccagtgaaatggct 436

                                                                       
Query: 237 cagtgggggtggaaaatgcttgtcacacaaggcaggtgaacagagtcatcagggtggaag 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cagtgggggtggaaaatgcttgtcacacaaggcaggtgaacagagtcatcagggtggaag 496

                                                                       
Query: 297 aaaagaacagacttccacaaattgtgcgattgtcctctgatctctgaacatgtgctatag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaaagaacagacttccacaaattgtgcgattgtcctctgatctctgaacatgtgctatag 556

                                                                       
Query: 357 cccaagcacccagcacaatactaaataaatatataaatataaacaaataaaaatataggt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cccaagcacccagcacaatactaaataaatatataaatataaacaaataaaaatataggt 616

                                                                       
Query: 417 tgaatttgaggggagacaaatctgtagtactggttcaaccctgtaccgaaggaatagctg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgaatttgaggggagacaaatctgtagtactggttcaaccctgtaccgaaggaatagctg 676

                                                                       
Query: 477 catcggatgagaatgtctctgcgtgaaggtctaaaaaccatgatgcagtggaatggcagt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 catcggatgagaatgtctctgcgtgaaggtctaaaaaccatgatgcagtggaatggcagt 736

                                                                       
Query: 537 gcagtgtaaaagatggcattgtcccagtctctcatctttgctttatgtttcccataatga 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gcagtgtaaaagatggcattgtcccagtctctcatctttgctttatgtttcccataatga 796

                                                     
Query: 597 agtatacctccacctctttcggatctactagtctcctataca 638
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 agtatacctccacctctttcggatctactagtctcctataca 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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