CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCTATACTATTCCCATTAGAATTTCATTTAATGGCCTTAATAAAATT
TCCTTCATAAGAGATTTGGTATATGAAAAGGTCTCATTACCTTTCATGTA
TAAGGAAATATCAGGAAGGCACAATTTCAATTAAGCAGCAGACAGGATAC
CATCAAAGTCTAAAGGTAGCTAGCTAAAAAGGACACCAAAGTAACAAAGA
TTATGGCTAGCTTTGTAAGGGCGGCAGTCAGTGGAGGGCTCTTCTTGTTC
ATCAGCCTTGTGGTACTGGGAGGATCACAGCTTTCATTTAGCATGCTACT
CTTGAGACTTGCTTTGTAGACCAGACACTGCTCTCAAGCTCAGACATCTT
ACCTTTGAGGCCTGAGTGCTAGGATTAAAGGTGTGCAATGCCATGTCTGG
TTAAATATTTGTTTTGTTTTGTTTTGATTTGTAATTTTTGTAGTTGTAAT
GAACATTTTTAAAATAAATTTTGTCGTTTTGGCTGGCATATCTAGCTAAA
TACTATGACACTAAGGTGCAGTCCTAGATCTTTTGTTTTGTTTTGTTTTG
TTTTGTTTTGCTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTG
TTTTGTTTAAACAGGTTTTCACTGTGTAGTCCTGACTAGCCTGGACCTGA
AAAAGATCTGCCTTCTTCTGCCTCTTAAGTGCTGGGTAACTGTGTGCCAA
AATGAAN

TACGATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTACTCCTAACATATAGCACTCT
GTAACACATATTCATTCATGATCCTGTGGACCAGATACAGAGTAATATAC
AATCATTGTTCTAGAGCTGCTGAGGATATAAAAACACTCAGAAAGGAATA
TAAAATAAATCAGGAAGGCAGAGCCATATGCCTCAGTTTTACTTGCAATA
CAGCATCAATGATAACCACCCAGCAGATATAATGACCTTCCATGTCTTGC
TGGGAAATAGCTTTTGATAGATGCTGTTGTCCTTGACCATAAACTTGCTG
TGTTTTTGCTGTTGCTGATTAGACTTATGTTTAACATTTGTGTGAATGGG
TGTTTTTCCTACTGAATGTAATACTGTATGTGGCTCCTCCTGAGGGACAT
TTCCCTCAGAGGACAGAAGAAGGAACCACAACCATTCCTGGAGATGATTG
TTAGGCACCATGTGGGTCTTCTAGAGAGCAGCAGATGCTCTAACCTGTGA
GGCATCCCCACACCTCCTGCAGTTGGCTTTTGTCCTTTCAGTGCATGTGC
TGCATTAGATGGACAGGATCAAGTCCAGTTGAGTGGAGAAATCTCTGGAG
ATGTCTAGGTACAGTGCCTGACCTGCACATACTCATTGTCCTAGGCTGCC
AGGCATATATGCAGGGCTCTGATGTTACCACTGCTAGTTCTGTGTTCAGA
GCTTTTN

Query= MSMg01no451_c21.b1 MSMg01no451_c21.b1 CHROMAT_FILE:
MSMg01no451_c21.b1 PHD_FILE: MSMg01no451_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:20 2005
         (687 letters)



>mm_chr5_17032862_17033948
          Length = 1087

 Score =  884 bits (457), Expect = 0.0
 Identities = 494/509 (97%), Gaps = 5/509 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatactattcccattagaatttcatttaatggccttaataaaatttccttcata 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaattctatactattcctattagaatttcatttaatggccttaataaaatttccttcata 445

                                                                       
Query: 65  agagatttggtatatgaaaaggtctcattacctttcatgtataaggaaatatcaggaagg 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agggatttggtatatgaaaaggtctcattacctttcatgtataaggaaatatcaggaagg 385

                                                                       
Query: 125 cacaatttcaattaagcagcagacaggataccatcaaagtctaaaggtagctagctaaaa 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacaatttcaattaagcagcagacaggataccatcaaagtctaaaggtagctagctaaaa 325

                                                                       
Query: 185 aggacaccaaagtaacaaagattatggctagctttgtaagggcggcagtcagtggagggc 244
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 324 aggacaccaaagtaacaaagattatggctagctttgtgagggcagcagtcagtggagggc 265

                                                                       
Query: 245 tcttcttgttcatcagccttgtggtactgggaggatcacagctttcatttagcatgctac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcttcttgttcatcagccttgtggtactgggaggatcacagctttcatttagcatgctac 205

                                                                       
Query: 305 tcttgagacttgctttgtagaccagacactgctctcaagctcagacatcttacctttgag 364
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 204 tcttgagacttgctttggagaccagacactgctctcaagctcagacatcttacctttgtg 145

                                                                       
Query: 365 gcctgagtgctaggattaaaggtgtgcaatgccatgtctggttaaatatttgttttgttt 424
           ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 144 gcctgggtgctaggatcaaaggtgtgcaatgccatgtctggctaaatatttgttttgttt 85

                                                                       
Query: 425 tgttttgatttgtaatttttgtagttgtaatgaacatttttaaaataaattttgtcgttt 484
           ||     |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  tg-----atttgtaatttttgtagttgtaatgaacatttttaaaataaattttgtcgttt 30

                                        
Query: 485 tggctggcatatctagctaaatactatga 513
           |||||||||||||||||||||||||||||
Sbjct: 29  tggctggcatatctagctaaatactatga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)