Query= MSMg01no451_e04.b1 MSMg01no451_e04.b1 CHROMAT_FILE:
MSMg01no451_e04.b1 PHD_FILE: MSMg01no451_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:27 2005
(681 letters)
>mm_chr5_14660613_14661694
Length = 1082
Score = 1249 bits (646), Expect = 0.0
Identities = 670/678 (98%), Gaps = 1/678 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtgattttacttaatggtattgttgctatagttacagctgaaatcttacataa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgattttacttaatggtattgttgctatagttacagctgaaatcttacataa 264
Query: 65 agcaaattacttattgatggagaaatgctgagtagcacggcacagtccctttgctgttcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaaattacttattgatggagaaatgctgagtagcacggcacagtccctttgctgttcc 324
Query: 125 tttgttattgccttcatttcctgttcccctcttaaaattaatggatttttagagtgctgt 184
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctattattgccttcatttcctgttcccctcttaaaattaatggatttttagagtgctgt 384
Query: 185 tttgttttgaacaagctttgatgattaaatgttaaaataactgcattttactaacatgtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgttttgaacaagctttgatgattaaatgttaaaataactgcattttactaacatgtt 444
Query: 245 gtacctgacaattgaatgtgtttgaatatggtgtgatcagcatagttatttcttatatac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtacctgacaattgaatgtgtttgaatatggtgtgatcagcatagttatttcttatatac 504
Query: 305 ttcttatttattagaattttctctacttggatatacatttttatattctaataactgata 364
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcttatttatcagaattttctctacttggatatacatttttatattctaataactgata 564
Query: 365 ttaaagaagtaaataagaatgtgggtattttcatatcatggaggcttctgattttgttac 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaaagaagtaaataagaatgtgggtattttcatatcatggaggcttctgattttgttac 624
Query: 425 atttaatactaactacataaaaat-tttattaacagtttattccactgatactaataaga 483
|||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 625 atttaatagtaactacataaaaaaatttattaacagtttattccactgacactaataaga 684
Query: 484 ctatcctcaaaataaaacattaaaatctatgggatacataaaaacaaataaccatggctt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctatcctcaaaataaaacattaaaatctatgggatacataaaaacaaataaccatggctt 744
Query: 544 gagaacctcaatattgatggctatatgtttgcaaatgtctccataagcatctaaagttag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gagaacctcaatattgatggctatatgtttgcaaatgtctccataagcatctaaagttag 804
Query: 604 tagaagtaatattgatactaaagtcagtattaggaatgtctttagaaatataaagtctat 663
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tagaagtaatattggtactaaagtcagtattaggaatgtctttagaaatataaagtctat 864
Query: 664 attaaatataagttttct 681
||||||||||||||||||
Sbjct: 865 attaaatataagttttct 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space: 719312
Effective search space used: 719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_e04.g1 MSMg01no451_e04.g1 CHROMAT_FILE:
MSMg01no451_e04.g1 PHD_FILE: MSMg01no451_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:27 2005
(588 letters)
>mm_chr5_14821975_14822965
Length = 991
Score = 812 bits (420), Expect = 0.0
Identities = 493/520 (94%), Gaps = 12/520 (2%)
Strand = Plus / Minus
Query: 1 ttcctggatg-catgagctacacagaccaggcagtcattcagatcggtacccagggggac 59
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 515 ttcctggatgacatgagctacacagaccaggcagtcattcagatcggtacccagggtgac 456
Query: 60 ttgatcacggtagtctccaactatttagcagtgtcttatgcataatatgtgtgctcatat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttgatcacggtagtctccaactatttagcagtgtcttatgcataatatgtgtgctcatat 396
Query: 120 ttaacaatagccagtgttggaaatataaaaaagatagtacgaatattggtacaataagga 179
||||||||||||||| |||||||||| |||| ||||||| | ||| ||||||||||||||
Sbjct: 395 ttaacaatagccagt-ttggaaatat-aaaatgatagtatggatactggtacaataagga 338
Query: 180 agaaaccacacaattttttgagtaaattattggctatttttcaga-caagtattgtta-- 236
|||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||
Sbjct: 337 agaaaccacacaatctttggagtaaattattggctatttttca-atcaagtattgttatg 279
Query: 237 ---tgattaagagtcttcaaatggttttcatttttttatctccttgagagttactttaaa 293
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 278 ctctgattaagagtcttcaaatggttttcattttttt-tctccttgagagttactttaaa 220
Query: 294 aataatctaattgtgagaaggaaaccattcttgaaggtagacctcatgcttagcagtaga 353
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 219 aataatctaattgtgagaaagaaaccatccttgaaggtagacctcatgcttagcagtaga 160
Query: 354 tggccaacataaaagagactcaacggcgtctttgtagattcttattttcataatgttttg 413
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 159 tggccaatataaaagagactcaacggcgtctttgtaggttcttattttcataatgttttg 100
Query: 414 tttgttttttgttttagaccttacaggtctttgtacatttattatgggttccagttttat 473
||||||||| |||||||||||| |||||||||| ||||||||||||| |||||||||| |
Sbjct: 99 tttgttttt-gttttagaccttgcaggtctttgaacatttattatggcttccagtttttt 41
Query: 474 gtttttatgggattactgtgtgtgcaaatgtgtgtgtgca 513
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 gtttttatgggattactgtgtgtgcaaatgtgtgtgtgca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 991
Length adjustment: 10
Effective length of query: 578
Effective length of database: 981
Effective search space: 567018
Effective search space used: 567018
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
