Query= MSMg01no451_e11.b1 MSMg01no451_e11.b1 CHROMAT_FILE:
MSMg01no451_e11.b1 PHD_FILE: MSMg01no451_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:28 2005
(323 letters)
>mm_chr5_88916482_88917204
Length = 723
Score = 617 bits (319), Expect = 0.0
Identities = 322/323 (99%)
Strand = Plus / Plus
Query: 1 agcatatggttaatagtcacttttgttcccaaaatatatttgtataaatgaagtttctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatatggttaatagtcacttttgttcccaaaatatatttgtataaatgaagtttctat 260
Query: 61 acttcaaagcccaaattcacaaggaaagcaccttctaaatcttactgctgtaagcttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttcaaagcccaaattcacaaggaaagcaccttctaaatcttactgctgtaagcttgtt 320
Query: 121 tttctgagctgttattatagataataagagactccattccacaggttctataataacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctgagctgttattatagataataagagactccattccacaggttctataataacaca 380
Query: 181 ttataaattttgcactggttttttttccactaactcttgtgatggcaaaaccatttttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttataaattttgcactggttttttttccactaactcttgtgatggcaaaaccatttttct 440
Query: 241 caaagctgattggttgtgcatgtctacaacagtgcttaaatgtgatcctgctatcaagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagctgattggttgtgcatgtctacaacagtgcttaaatgtgatcctgctatcaagcc 500
Query: 301 tcctgacaaggatggatcttttt 323
|||||||||||| ||||||||||
Sbjct: 501 tcctgacaaggagggatcttttt 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_e11.g1 MSMg01no451_e11.g1 CHROMAT_FILE:
MSMg01no451_e11.g1 PHD_FILE: MSMg01no451_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:28 2005
(672 letters)
>mm_chr5_89102908_89103977
Length = 1070
Score = 1145 bits (592), Expect = 0.0
Identities = 608/614 (99%), Gaps = 2/614 (0%)
Strand = Plus / Minus
Query: 59 ggcatctgggaagtgtctacctaacctggtaacgccactggccatgtttatcttaattta 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 ggcatctgggaagtgtctacctaacctggtaacgccactggccatgtttatcttaattta 1011
Query: 119 gttttgcgtctgcttgaattagtgatatctgggtggttcatctgcatggctgatgtctgc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 gttttgcgtctgcttgaattagtgatatctgggtggttcatctgcatggctgatgtctgc 951
Query: 179 cagtagctgagctaattgatttgaatcccggcccaatactttctgctgcactatttattt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 cagtagctgagctaattgatttgaatcccggcccaatactttctgctgcactatttattt 891
Query: 239 atttatttacttatttattttgtaaagatgtttatggaattctggggaaacagaaagtag 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 atttatttacttatttattttgtaaagatgtttatggaattctggggaaacagaaagtag 831
Query: 299 cagtctgagccccctgccgcgcctgtctctgctgttgccttttctgtttttttttccctt 358
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 830 cagtttgagccccctgccgcgcctgtctctgctgttgccttttctg--tttttttccctt 773
Query: 359 attcacttgctcttacattagtcttttcaaggcgtttacccatgtcccaatgccttttta 418
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 atccactttctcttacattagtcttttcaaggcgtttacccatgtcccaatgccttttta 713
Query: 419 ttaacttcctttgcctacaaagtgaagtatcccttcatagagcccaacacaaaatagcca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ttaacttcctttgcctacaaagtgaagtatcccttcatagagcccaacacaaaatagcca 653
Query: 479 gctgctgtgccttttgcctttggctcttcattttactgtccagtttgggcaaatgtgttt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gctgctgtgccttttgcctttggctcttcattttactgtccagtttgggcaaatgtgttt 593
Query: 539 gctgtttttcacatgctaacacttcccctcccctcccaaattgtaatgtcctatctttta 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gctgtttttcacatgctaacacttcccctcccctcccaaattgtaatgtcctatctttta 533
Query: 599 tatctcccatctttattctttttttcccctgtagttttctttttttttaatttacaggat 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 532 tatctcccatctttattctttttttcccctgtagttttctatttttttaatttacaggat 473
Query: 659 tttgtatttttatt 672
||||||||||||||
Sbjct: 472 tttgtatttttatt 459
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1070
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1060
Effective search space: 701720
Effective search space used: 701720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
