Query= MSMg01no451_f07.b1 MSMg01no451_f07.b1 CHROMAT_FILE:
MSMg01no451_f07.b1 PHD_FILE: MSMg01no451_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:32 2005
(626 letters)
>mm_chr5_10142748_10143772
Length = 1025
Score = 1118 bits (578), Expect = 0.0
Identities = 611/622 (98%), Gaps = 1/622 (0%)
Strand = Plus / Plus
Query: 5 gaattcattatgttctcagtgacaggggaggttactgaggaagaatgagatgataaccat 64
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatt-attatgttctcagtgacaggggaggttactgaggaagaatgagatgataaccat 263
Query: 65 atggaatgagaagatagtcatacgcatacttagggcttctcgtcaccagtagagacatat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atggaatgagaagatagtcatacgcatacttagggcttctcgtcaccagtagagacatat 323
Query: 125 gaatatgaaaatatcagctacctctgaggtaaagggtatgatcactggtcagagatattc 184
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaatatgaaaatatcaaccacctctgaggtaaagggtatgatcactggtcagagatattc 383
Query: 185 catcactaaagaagattaagtaactaaaagaggtaaacatcacacacctctgaaaaatta 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 384 catcactaaagaagattaagtaactaaaagaggtaaacatcacatacctctgaaaaatta 443
Query: 245 tatttcattgtccttctgaatctattttacaattattttaccagtcaggtgaatcacctg 304
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatttaattgtccttctgaatctattttacaattattttaccagtcaggtgaatcacctg 503
Query: 305 gacagaagactctgtgattcctgtgacattgacatctgtgttgcttctaaagcttggaat 364
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 gacagaagactctgtgattcctgtgacattgacatctgtgttgcttctaaagtttggaat 563
Query: 365 tgatatcatcatgaaaggggaaagaagagagtatttcttaggcataaaaagagatacaca 424
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaaatcatcatgaaaggagaaagaagagagtatttcttaggcataaaaagagatacaca 623
Query: 425 ggttacaatctatataaattaatgcaccaacatatctaagaaatagtgtattttgtgtta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggttacaatctatataaattaatgcaccaacatatctaagaaatagtgtattttgtgtta 683
Query: 485 caaaaagtgggcagaaggaagcaaagatgtttgccaaggagatagatttggagttgaaat 544
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caaaaagtgggtggaaggaagcaaagatgtttgccaaggagatagatttggagttgaaat 743
Query: 545 gatttgtgggctgtaagtaaagcaacattagctaatggttttcaacttgttagtgcttat 604
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gatttgtgggctgtgagtaaagcaacattagctaatggttttcaacttgttagtgcttat 803
Query: 605 agccatggtacattcctggtgt 626
||||||||||||||||||||||
Sbjct: 804 agccatggtacattcctggtgt 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1025
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1015
Effective search space: 625240
Effective search space used: 625240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_f07.g1 MSMg01no451_f07.g1 CHROMAT_FILE:
MSMg01no451_f07.g1 PHD_FILE: MSMg01no451_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:32 2005
(630 letters)
>mm_chr5_10312342_10313371
Length = 1030
Score = 1118 bits (578), Expect = 0.0
Identities = 617/630 (97%)
Strand = Plus / Minus
Query: 1 ctgcgactgatcctttcatcaaaaggagtctggagctaatgggcttccatccttttaagt 60
|||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 786 ctgcaactgattctttcatcaaaaggaggctggagctaatgggcttccatccttttaagt 727
Query: 61 atactgtgatagctcattacaaaatatttattcattgaactggtaagatggctcattgag 120
||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 726 atactgtgatagcaaattacaaaatgtttattcattggactggtaagatggctcattgag 667
Query: 121 ttaaggtgctaacttccaagtttgacagctcaggtttaatccctagttatgtagtgttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ttaaggtgctaacttccaagtttgacagctcaggtttaatccctagttatgtagtgttac 607
Query: 181 aggaaagactggatcacacaggttgtcctttggctttcagtgcatgtcatgtcatgtgtt 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 606 aggaaagactggatcacacaggttgtccttcggctttcagtgcatgtcatgtcatgtgtt 547
Query: 241 tcctgttcccaataaaataaatgagtgcattttgaatgatatgttacacgagaaagcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 546 tcctgttcccaataaaataaatgagtgcattttgaatgatatgttacacaagaaagcttc 487
Query: 301 tgtgtatttaaatgctatatatattatttcattctttactaattctatttatctctttgt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgtgtatttaaatgctatatatattatttcattctttactaattctatttatctctttgc 427
Query: 361 tagaaaagaaccctagtataatattgaatgggaatgagaaagaagagatttatgtcttgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tagaaaagaaccctagtataatattgaatgggaatgagaaagaagagatttatgtcttgt 367
Query: 421 atgtgaccctagaaagaatattgtctactttttaaatattaagtatgatattggctacaa 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgtgaccctaggaagaatattgtctactttttaaatattaagtatgatattggctacaa 307
Query: 481 aaatttgtacatttatttttatcaactaaaaatttatattttatgtttgatttaatggta 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaatttgtacattcatttttatcaactaaaaatttatattttatgtttgatttaatggta 247
Query: 541 atttggctttcagtttttgttataaataggtactgcgttggtcatatacattttggcata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atttggctttcagtttttgttataaataggtactgcgttggtcatatacattttggcata 187
Query: 601 tgttgatatgaaaatataatttttttcttt 630
||||||| ||||||||||||||||||||||
Sbjct: 186 tgttgatgtgaaaatataatttttttcttt 157
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
