Query= MSMg01no451_j04.b1 MSMg01no451_j04.b1 CHROMAT_FILE:
MSMg01no451_j04.b1 PHD_FILE: MSMg01no451_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:52 2005
(645 letters)
>mm_chr5_5895144_5896192
Length = 1049
Score = 1220 bits (631), Expect = 0.0
Identities = 640/645 (99%), Gaps = 4/645 (0%)
Strand = Plus / Minus
Query: 5 gaattctaagccatatcacagagatatgtgtacattgatggttatggaagttgtatttac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gaattctaagccatatcacagagatatgtgtacattgatggttatggaagttgtatttac 790
Query: 65 aatagctattgggaactaccttcagcatccaatacaggaactcataaggaaaacatcata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aatagctattgggaactaccttcagcatccaatacaggaactcataaggaaaacatcata 730
Query: 125 c----ataacaatgattgtttttcaaatcataactgacatagctatgacatttgaagaag 180
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 catatataacaatgaatgtttttcaaatcataactgacatagctatgacatttgaagaag 670
Query: 181 aatggagtaactaaagaaaggcacacaatgcccatcaggcattagacaaagaaaaaaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aatggagtaactaaagaaaggcacacaatgcccatcaggcattagacaaagaaaaaaaag 610
Query: 241 acaaatggcatatgttttctcttatctatggttattagattttatagtgatacataaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acaaatggcatatgttttctcttatctatggttattagattttatagtgatacataaaat 550
Query: 301 cctgtatgtatatgtggtatgcaaatacagaaggaactgtctagggtaacaagtgggact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cctgtatgtatatgtggtatgcaaatacagaaggaactgtctagggtaacaagtgggact 490
Query: 361 gtgtgtggggagagtggagagatggagtcattgtataaaatgttcttatgtcaagtgtaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gtgtgtggggagagtggagagatggagtcattgtataaaatgttcttatgtcaagtgtaa 430
Query: 421 aattgacatgcacagtgaaaataaataaacagaaaggataaaaatggctttagcaataat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aattgacatgcacagtgaaaataaataaacagaaaggataaaaatggctttagcaataat 370
Query: 481 ttgacagtgtcaaaggcttgtcctcatgttgccttttgttcataaagttatgaaatcatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttgacagtgtcaaaggcttgtcctcatgttgccttttgttcataaagttatgaaatcatc 310
Query: 541 ttttattcttcatttacctcatctgtgaagagacacaacatggaaagtggagcccaggag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttttattcttcatttacctcatctgtgaagagacacaacatggaaagtggagcccaggag 250
Query: 601 caggtttgaaaagacaaacagagtataaaccatagcctgatcacc 645
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 caggtttgaaaagacaaacagagtataaaccatagcctgatcacc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1049
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1039
Effective search space: 659765
Effective search space used: 659765
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_j04.g1 MSMg01no451_j04.g1 CHROMAT_FILE:
MSMg01no451_j04.g1 PHD_FILE: MSMg01no451_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:52 2005
(609 letters)
>mm_chr5_5740552_5741560
Length = 1009
Score = 1135 bits (587), Expect = 0.0
Identities = 606/617 (98%), Gaps = 8/617 (1%)
Strand = Plus / Plus
Query: 1 ctgcgtgtgctgaagctcggaggggcagtcaaaggcatcgacgtggaccgcgtgctgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcgtgtgctgaagctcggaggggcagtcaaaggcatcgacgtggaccgcgtgctgcaa 260
Query: 61 gtgcgagagccccggtcttttcagcatgctcgtctctcccgagtccttagtctacgaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcgagagccccggtcttttcagcatgctcgtctctcccgagtccttagtctacgaaag 320
Query: 121 aaagggaacatcttaacactggacaaagcatgggatttcttttacctgctccatcgttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagggaacatcttaacactggacaaagcatgggatttcttttacctgctccatcgttgt 380
Query: 181 gcttcttggtgaatagagcattcagaagctcgcttgtggataccaggcagctaaagccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttcttggtgaatagagcattcagaagctcgcttgtggataccaggcagctaaagccag 440
Query: 241 tatagtctgtgtaagactgacccaggatgcaccccgatacactggtgttccgcacttgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagtctgtgtaagactgacccaggatgcaccccgatacactggtgttccgcacttgcc 500
Query: 301 tatttatttccctctttgtgttagagccagggtctgtagctcaggcaggcttttctccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttatttccctctttgtgttagagccagggtctgtagctcaggcaggcttttctccca 560
Query: 361 ctgctgggcacgtgctgggttagcagcatatgctaccaaactgggttccatttctcttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgctgggcacgtgctgggttagcagcatatgctaccaaactgggttccatttctcttta 620
Query: 421 aaataaaagagatacatgcccacacatcaaggtttacacagttccttctcttttgaagac 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 aaataaaagagatacatgcccacacaccaaggtttacacagttccttctcttttgaagac 680
Query: 481 ttgaaataatggaataatttcttt--------gacaggttttctcagtgtagtgctggct 532
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 681 ttgaaataatggaataattttttttttttttggacaggttttctcagtgtagtgctggct 740
Query: 533 atcctggaacttactctgtagaccaggcttaaactcatagagatctacctgtgtctgcct 592
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 atcctggaacttactctgtagaccaggcttaaactcatagagatcttcctgtgtctgcct 800
Query: 593 cccagtacttgaaatta 609
|||||||||||||||||
Sbjct: 801 cccagtacttgaaatta 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
