Query= MSMg01no451_m01.b1 MSMg01no451_m01.b1 CHROMAT_FILE:
MSMg01no451_m01.b1 PHD_FILE: MSMg01no451_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:07 2005
(623 letters)
>mm_chr5_9031959_9032981
Length = 1023
Score = 994 bits (514), Expect = 0.0
Identities = 535/542 (98%)
Strand = Plus / Minus
Query: 5 gaattcaatcattacagaacgttaagaatcatttcccctgactggactacgtttcagcac 64
|||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct: 542 gaattcaatcgttacagaacattaagaattatttcccctgattggactacgtttcagcac 483
Query: 65 tatgccgtgatcgtcccctggagcacttggccacgtgtcattcatccagacttggctctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tatgccgtgatcgtcccctggagcacttggccacgtgtcattcatccagacttggctctg 423
Query: 125 tgtccagcttctctgaggtggcaatggatagactcaagcatgccagaagctgtggttctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgtccagcttctctgaggtggcaatggatagactcaagcatgccagaagctgtggttctt 363
Query: 185 ccttctgatgatagcatctcactgtcaattattcctcccaggtttatgtaaagtagtttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ccttctgatgatagcatctcactgtcaattattcctcccaggtttatgtaaagtagtttg 303
Query: 245 agcataaaccaaaagtcagagacatctaggtttgattcctgacgcatcactagtcaagta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agcataaaccaaaagtcagagacatctaggtttgattcctgacgcatcactagtcaagta 243
Query: 305 actggtcacattaatttttgtactgctactgtaattaagtaaccctggctgtcctagaac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 actggtcacattaatttttgtactgctactgtaattaagtaaccctggctgtcctagaac 183
Query: 365 tcgctctgaagatcaggctggccttgaactcagagaaccttctgcttctgccttttgagt 424
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 182 tcgctctgaagatcagactggccttgaactcagaaaaccttctgcttctgccttttgagt 123
Query: 425 gtcaggattaaagacaagtgccactatcacccagcttgtttgtttcatcttaagagataa 484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 122 gtcaggattaaagacaagtgccaccatcacccagcttgtttgtttcatcttaagagataa 63
Query: 485 gaagccacaaaaggtggtgcacacctttaatcccagcacttggaaggcagaggcagaggc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gaagccacaaaaggtggtgcacacctttaatcccagcacttggaaggcagaggcagaggc 3
Query: 545 ag 546
||
Sbjct: 2 ag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_m01.g1 MSMg01no451_m01.g1 CHROMAT_FILE:
MSMg01no451_m01.g1 PHD_FILE: MSMg01no451_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:07 2005
(623 letters)
>mm_chr5_8872075_8873097
Length = 1023
Score = 1096 bits (567), Expect = 0.0
Identities = 613/643 (95%), Gaps = 25/643 (3%)
Strand = Plus / Plus
Query: 1 caagttgtgcttcaacctgttctgatatacaaaacagccatttgtcttcagatcccataa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 186 caagttgtgcttcaacctgttctgatatacaacacagccatttgtcttcagatcccataa 245
Query: 61 caagtccttttatgacaaatccagttttgcttactcagctcagaaccctggtgctccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 caagtccttttatgacaaatccagttttgcttactcagctcagaaccctggtgctccagg 305
Query: 121 tttgcagacctttgaaagggaggatcactttacagcactgtgctgctgagcttggcaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttgcagacctttgaaagggaggatcactttacagcactgtgctgctgagcttggcaacc 365
Query: 181 ctggacagacagcaaaggggcagtaagtaccaaactctggtcctctttgtctctgacctt 240
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 366 ctggacagacagcaa-ggggcagtaagtaccaaactctggtcctctttctctctgacctt 424
Query: 241 gtgtcaagttttctggaaattaatgcaagacagagcaacagtattcttacctaaagcatt 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gtgtcaggttttctggaaattaatgcaagacagagcaacagtattcttacctaaagcatt 484
Query: 301 aaaattcttcctacacacacacacacacacacacaca--------------------aac 340
||||||||||||||||||||||||||||||||||||| |||
Sbjct: 485 aaaattcttcctacacacacacacacacacacacacacacacacacacacacacacaaac 544
Query: 341 aggagagggggaaggggagacagacagacagacagacagacaacacacacaggagagagt 400
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 545 aggagagggggaaggggagacagacagacagacagaca----acacacacaggagagagt 600
Query: 401 gggggaggggggagacagacagacagacaacacacacacagacacacacagacagacaga 460
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 601 gggggaggggggagacagacagacagacaacacacacagagacacacacagacagacaga 660
Query: 461 cacacagacacacagagacaggcaggccgacaggtaaacagagacagaaagacacagaga 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cacacagacacacagagacaggcaggccgacaggtaaacagagacagaaagacacagaga 720
Query: 521 cacagaaagacggctcctcaaaaacaagttagaaggggtgggaatggaaagaacgaagaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cacagaaagacggctcctcaaaaacaagttagaaggggtgggaatggaaagaacgaagaa 780
Query: 581 ggagaatgtgaggagcacttgaaggagcatttaaagatcaaga 623
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 781 ggagaatgtgaggagcacttgaaggagcatttgaagatcaaga 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
