BAC Information

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BAC

Clone NameMSMg01-451M12
Chromosome5 (Build37)
Map Location 127,705,081 - 127,893,635
singlet/doubletdoublet
Overlap geneTmem132c
Upstream geneLOC100040327
Downstream geneSlc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451M12.T7 (MSMg01no451_m12.b1)MSMg01-451M12.TJ (MSMg01no451_m12.g1)
ACCAG539190AG539191
length754756
length of high quality
(start - end)		604 (77 - 680)604 (73 - 676)
definitionCHROMAT_FILE: MSMg01no451_m12.b1 PHD_FILE: MSMg01no451_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:09 2005CHROMAT_FILE: MSMg01no451_m12.g1 PHD_FILE: MSMg01no451_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,893,089 - 127,893,635)(127,705,081 - 127,705,666)
sequence
GAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCAAGAGGAGGCGC
GGAATTCAGTTCTTTCCGGTAGGGAAGTACTATGGCTAGCTTGGCTCATG
GTGGCGGGAACTCAAAGCATGGCTTGCTCATATCTTCAAGGATTAGAAAG
CAGACTGCAAGATGCAAGCAGAACTGAATTATAACCTTGGAGGCCTGCCC
TTATTGGCCTGTGCCTGGAACCTAGGCTCTGTGCACCGAAGATCCTAGAA
CTCCCCCTTCCCCACAAACACTGCAGCCACCTGGGGACTTGGTTGAAACA
CACAAGCCTATGAAGGGCATTTGACATCAAAACATCACCTGTAAGAATTG
AAGAAAATGACTAGTGCCTGTCCTTACCCACATTTTGTGTCCTCCCTGGC
TGGGATAACCATCCGTACGTCCTTAAAAACCTGAATGACTGTTGCAGAGC
ACCATCCTCCCAGCAACACAGCCTCCATGTTCAAGTTTGTGAGCGTTCAT
CATGATGGGGCTCATGGACAGTTGACACTAGGAGGGGCTGGGGAGGGTCA
TGGGACTCTTACCTGAGTATCCAGCCACTCCTTATGGCCATTCATATACA
GCTCTGCTGTAACTACATGCAATCTTCGAGTCTAGGGGAAGATTAGAGTA
TAGATAGAATCTAGGGAACACTAGGGGAAGGGTCTCCATCAGCAGCTGTG
AAGACATTATCATCTATGCTGGATGCAGAATGTCCAGTGTGGCTACTTTT
GGGT

NCCGATGAAATGGGAGGCCTGGCGGCGCCTGGTTCAAAATAGGGGTGAAC
TATAGAAGTACTAAAGAAAGCGCTATGTAGACCCAGCTGGCCTCGAACTC
ATAGAGATCTTCTTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCATGC
ACCTCCACTCCCAGGCTCAGTTTCAACCTTCTCAATGAAGACACTTATGT
TGCCCTAGTGAGGCAGGCATGACAAAACCGCACAGACAGAGGTTTGAACA
GCAGAGAAAATTTTTCTATGATTCCAGACACCACAAGTTCGGGCTCCCAT
TATCAGCTAGGTCTTTTCTCCCCCAGGCTGCTGTTCCTCATCCCTTCAAT
CATGACTGGGGTCATGACTTTTGCTTCCTATAAACACAAAAGTCACTGGG
GCCTCAGGTCACTGTAAATGCCCCTTTAACGAGCCCTTTCCAGATAGAGT
CATAGTCCATGAAGGGGGTGATGAGAGGATCACAAATCCTCCGGGAAGTT
ATCTATGTCAATTTGTGGCGTTCTTTCACAGGGATGAGAAATTAACACAG
AGCCCTGTGCCCACCCCCCACCATGGGCTGGCATTGATTTAAGCACACGG
TTTGTGGCTGTTTGTTTAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAAACAGTCATAGGAGTTAACCATGAAGCACCC
CGAACTTTCCACACAGAGAAATAACTGTAGATCTAGTTCTGTGGCATTGT
TGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_m12.b1 MSMg01no451_m12.b1 CHROMAT_FILE:
MSMg01no451_m12.b1 PHD_FILE: MSMg01no451_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:09 2005
         (604 letters)



>mm_chr5_127892632_127893635
          Length = 1004

 Score = 1011 bits (523), Expect = 0.0
 Identities = 541/547 (98%)
 Strand = Plus / Minus

                                                                        
Query: 58   cttcaaggattagaaagcagactgcaagatgcaagcagaactgaattataaccttggagg 117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 cttcaaggattagaaagcagactgcaagatgcaagcagaactgaattataaccttggagg 945

                                                                        
Query: 118  cctgcccttattggcctgtgcctggaacctaggctctgtgcaccgaagatcctagaactc 177
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 944  cctgcccttattggcctgtgcctggaacctaggctctgtgcactgaagatcctagaactc 885

                                                                        
Query: 178  ccccttccccacaaacactgcagccacctggggacttggttgaaacacacaagcctatga 237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  ccccttccccacaaacactgcagccacctggggacttggttgaaacacacaagcctatga 825

                                                                        
Query: 238  agggcatttgacatcaaaacatcacctgtaagaattgaagaaaatgactagtgcctgtcc 297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824  agggcatttgacatcaaaacatcacctgtaagaattgaagaaaatgactagtgcctgtcc 765

                                                                        
Query: 298  ttacccacattttgtgtcctccctggctgggataaccatccgtacgtccttaaaaacctg 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  ttacccacattttgtgtcctccctggctgggataaccatccgtacgtccttaaaaacctg 705

                                                                        
Query: 358  aatgactgttgcagagcaccatcctcccagcaacacagcctccatgttcaagtttgtgag 417
            ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 704  aatgactgttgtagagcaccatcctcccagcaacacagcctccatgttcaaatttgtgag 645

                                                                        
Query: 418  cgttcatcatgatggggctcatggacagttgacactaggaggggctggggagggtcatgg 477
            |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 644  cgttcatcatgatggggctcatggacggttgacactaggaggggctggagagggtcatgg 585

                                                                        
Query: 478  gactcttacctgagtatccagccactccttatggccattcatatacagctctgctgtaac 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584  gactcttacctgagtatccagccactccttatggccattcatatacagctctgctgtaac 525

                                                                        
Query: 538  tacatgcaatcttcgagtctaggggaagattagagtatagatagaatctagggaacacta 597
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 524  tacatgcaatcttcgagtctaggggaaaattagagtatagatagaatctagggaacacta 465

                   
Query: 598  ggggaag 604
            |||||||
Sbjct: 464  ggggaag 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no451_m12.g1 MSMg01no451_m12.g1 CHROMAT_FILE:
MSMg01no451_m12.g1 PHD_FILE: MSMg01no451_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:09 2005
         (604 letters)



>mm_chr5_127704881_127705884
          Length = 1004

 Score = 1110 bits (574), Expect = 0.0
 Identities = 583/586 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatgtagacccagctggcctcgaactcatagagatcttcttgcctctgcctcccaagtg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ctatgtagacccagctggcctcgaactcatagagatctacttgcctctgcctcccaagtg 260

                                                                       
Query: 61  ctggaattaaaggcatgcacctccactcccaggctcagtttcaaccttctcaatgaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggaattaaaggcatgcacctccactcccaggctcagtttcaaccttctcaatgaagac 320

                                                                       
Query: 121 acttatgttgccctagtgaggcaggcatgacaaaaccgcacagacagaggtttgaacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttatgttgccctagtgaggcaggcatgacaaaaccgcacagacagaggtttgaacagc 380

                                                                       
Query: 181 agagaaaatttttctatgattccagacaccacaagttcgggctcccattatcagctaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagaaaatttttctatgattccagacaccacaagttcgggctcccattatcagctaggt 440

                                                                       
Query: 241 cttttctcccccaggctgctgttcctcatcccttcaatcatgactggggtcatgactttt 300
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagttctcccccaggctgctgttcctcatcccttcaatcatgactggggtcatgactttt 500

                                                                       
Query: 301 gcttcctataaacacaaaagtcactggggcctcaggtcactgtaaatgcccctttaacga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcttcctataaacacaaaagtcactggggcctcaggtcactgtaaatgcccctttaacga 560

                                                                       
Query: 361 gccctttccagatagagtcatagtccatgaagggggtgatgagaggatcacaaatcctcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccctttccagatagagtcatagtccatgaagggggtgatgagaggatcacaaatcctcc 620

                                                                       
Query: 421 gggaagttatctatgtcaatttgtggcgttctttcacagggatgagaaattaacacagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggaagttatctatgtcaatttgtggcgttctttcacagggatgagaaattaacacagag 680

                                                                       
Query: 481 ccctgtgcccaccccccaccatgggctggcattgatttaagcacacggtttgtggctgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccctgtgcccaccccccaccatgggctggcattgatttaagcacacggtttgtggctgtt 740

                                                         
Query: 541 tgtttaataataataataataataataataataataataataataa 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtttaataataataataataataataataataataataataataa 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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