Query= MSMg01no452_b03.b1 MSMg01no452_b03.b1 CHROMAT_FILE:
MSMg01no452_b03.b1 PHD_FILE: MSMg01no452_b03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:31 2005
(596 letters)
>mm_chr5_89351441_89352436
Length = 996
Score = 1033 bits (534), Expect = 0.0
Identities = 584/614 (95%), Gaps = 23/614 (3%)
Strand = Plus / Plus
Query: 5 gaattcagtgctaaagtgttctctctctctctc----------tctctctctctctctct 54
|||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 183 gaattcagtgctaaggtgttctctctctctctccctcactccctctctctctctctctct 242
Query: 55 ctctctctctctc------------tctctctctctccctccccccctccctctttctct 102
||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct: 243 ctctctctctctccctccccctctctctctctctctccctccctcccttcctctttctct 302
Query: 103 gtctgccttccttccttaaaaatagattacttcttatacaacacatcctgaacacagttt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtctgccttccttccttaaaaatagattacttcttatacaacacatcctgaacacagttt 362
Query: 163 ctctcctactcccttacattccctacctttccccacctccaccgacctccccataccttc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctctcctactcccttacattccctacctttccccacctccaccgacctccccataccttc 422
Query: 223 ctctacctcccccccacctccctccacctcccctcttcctcagatccactccccctccat 282
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctctacctcccccc-acctccctccacctcccctcttcctcagatccactccccctccat 481
Query: 283 tttctctcagaaaacaacaggcctccaagagacaacaaccaactaaacatgacaaaacaa 342
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 482 tttctctcagaaaacaacaggcctccaagagacaacaaccaaccaaacatgacaaaacaa 541
Query: 343 gatacaataagacaaggcaaaagccttcatatcaaggcgggacaaggcaaccaacccaac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gatacaataagacaaggcaaaagccttcatatcaaggcgggacaaggcaaccaacccaac 601
Query: 403 agggggaaaagagtcccaagagcaggcaaaagagtcagacacccccacccccacttagga 462
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agggggaaaagagttccaagagcaggcaaaagagtcagacacccccacccccacttagga 661
Query: 463 gtttcataaaatcctcaagctaacagccaggggctaacgtcctctaaggtgtcagtgcac 522
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 662 gtctcataaaatcctcaagctaacagccaggggctaatgtcctctaaggtgtcagtgcac 721
Query: 523 ccttggagtcccgagagtggtggggcctggtttctggcatggcgtggaaggagctgactc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ccttggagtcccgagagtggtggggcctggtttctggcatggcgtggaaggagctgactc 781
Query: 583 tgatattttccttt 596
||||||||||||||
Sbjct: 782 tgatattttccttt 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_b03.g1 MSMg01no452_b03.g1 CHROMAT_FILE:
MSMg01no452_b03.g1 PHD_FILE: MSMg01no452_b03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:31 2005
(621 letters)
>mm_chr5_89536791_89537815
Length = 1025
Score = 1089 bits (563), Expect = 0.0
Identities = 608/625 (97%), Gaps = 4/625 (0%)
Strand = Plus / Minus
Query: 1 tcatcatttagattctctatagatgctggaagctggcaggtgtgtgcttg----attaat 56
|||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct: 642 tcatcatttagattctgtatagatgctggaagctggcaggtgtatgcttgattaattaat 583
Query: 57 tacacagagtcatggcttccagtcagtgtaaatccaactcaatacttccatggtacatct 116
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 582 tacacagagtcatggcttccagtcagtgtgaatccaactcaatacttccatggtacatct 523
Query: 117 tcaccctccatgtcaaccaatatcaaaataaatactatcctgaagggggaaagcattatc 176
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 522 tcaccctccatgtcaaccaatagcaaaataaatactatcctgaagggagaaagcattatc 463
Query: 177 cgtaatagcaaattctcttcacggtggtatttagtcagaaattatcagcaagagaaacaa 236
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 462 cgtaatagcaaattctcttcacggtggtatttagtcaaaaattatcagcaagagaaacaa 403
Query: 237 acacaaactagccacaaccttaaagcagaggaagccagcaaagctattaaacacgagctt 296
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 402 acacaaactagccacaaccttaaagcagaggcagacagcaaagctattaaacacgagctt 343
Query: 297 cacaaagacttcatgacatcttactatatttgttataagatgtgggacttcggtgcaatc 356
||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 342 cacaaagacttcatgacattttagtatatttgttataagatgtgggacttcagtgcaatc 283
Query: 357 tatcctaaaggcaaaacattcttcttgccgattaaaagatatcattggattattaaacac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tatcctaaaggcaaaacattcttcttgccgattaaaagatatcattggattattaaacac 223
Query: 417 aacatccctatagcctagatgcacatattcaaacatattcaaatgcagccaaacctgtgc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aacatccctatagcctagatgcacatattcaaacatattcaaatgcagccaaacctgtgc 163
Query: 477 agtcactaaaacttatggccttaactacaagccttataaaagaaaggctaaagatctatg 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 agtcactaaaacttgtggccttaactacaagccttataaaagaaaggctaaagatctatg 103
Query: 537 tgtacacatcaagaagaataaaataatatgggagagtttgggtgtgtcgctcaaagatag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tgtacacatcaagaagaataaaataatatgggagagtttgggtgtgtcgctcaaagatag 43
Query: 597 ggcatatgtctagtgtgcacaaggc 621
|||||||| ||||||||||||||||
Sbjct: 42 ggcatatgcctagtgtgcacaaggc 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1025
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1015
Effective search space: 620165
Effective search space used: 620165
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
