BAC Information

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BAC

Clone NameMSMg01-452C01
Chromosome5 (Build37)
Map Location 52,515,830 - 52,516,174
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041059, Ppargc1a
Downstream geneDhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452C01.T7 (MSMg01no452_c01.b1)MSMg01-452C01.TJ (MSMg01no452_c01.g1)
ACCAG539454AG539455
length780766
length of high quality
(start - end)
466 (46 - 511)355 (79 - 433)
definitionCHROMAT_FILE: MSMg01no452_c01.b1 PHD_FILE: MSMg01no452_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:36 2005CHROMAT_FILE: MSMg01no452_c01.g1 PHD_FILE: MSMg01no452_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTTAGATCTGGACTCGATGTTTAAATTGGGTTATTTGTTTG
CTTGGTGTCCAGTTTTTTTAATTCTTTATATATTTTGAACATTAGCCCTC
TATTAAAAGTACAGTTGGGTAAAAAAAAAAAAAAAAAAAAAGCCTTTTCC
CATTTTAGTGGCTGCTGTGGTATCTGGATGATGCTGTCCCTTGCCATGCA
AAAGCTTTTCATTTTTATGAGGTCCCATTTATTAATTGTTGATCTTAGTG
CCTATGTTAGCAATATTCTGTTCAGAAAGTCTTCTCCTGTGCCAATGATC
TCAAGGCTACTTCCCACTTTCTCTTCTATCAGGTTCAGAGTACTGAGTTT
TATGTTGAGGTTGAGCCATTTGGGTTTTGTTCAGGACGATAAGAATGGAT
CTATTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCACACGGGAC
TCCCCACTGGACCCTAAGACCTCTGGTGAGTGGAATACAGCGCTTGCCCC
AATCCAATCGCGCGGAACTTGAGACTGCGGGACATAGGGAAGCAGGCTAC
CCTGGGCTGGATCTGGGGTACATGGCCCTTTCCGCTTCGACCCCAGACTT
GAAGCCCCGGGATTTCCCTGGCCAGCAGATTTTTTGCCCACCAACTCGGT
AAGGGTCCCTACATGGGGGAATTCTCCGCACGGTGATACCCTAACAACCC
TCCTTGGTGGATATGTTAACACCTTTACGC
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGACAATGGTCTCTAGGA
GATGACGCCACACTTAGATTTGCTCTGTCCAGAACACCCTTCCTTCCCTA
TCCTGAAAGGCTAGCAAAGCCCTTCGCAAGCTCTAGCTCTGAGGCTGGGG
ACAAGCCCTTCATGGGGACAGCCCTCTATACTGGTCTCAGAGGCTATAAC
CCTTGTGTCTCACTTCTCCCCATGAATACCGTTTCCTGCAAGCTGAGCTG
CACACCTTGGGTTTCTGCATTTAGCTCAGGACCTGCTCAATTCAAGTTGA
CTGGAAAAGACTGTATAGACCTTTAAAAGAACAAGAAGAAGAAGAAGAAG
AAGAAAAAAAGCAATCCCCTACACAGAGAGCCGCAATAAAGAAAATGTGT
TCTACTACCACCTTGGGACCTCAATTAATGTGCTTCTCTTCTCGTGAGTC
CTCGCTTTCAACTAACAGAATCTGACAGGCCGAATTAAATCATTTTATCT
TTCTAGTTCCCTGCCTTGGCTCTAACGCTAGTGTAAAAACCCTGATATTT
CATAAGAAAGTGGCCAATACAATAGCTGAGGTCTGGGACCCTCCACTTTT
ATCTGCTTGTGGGGGCCCATTAATACTTATTATATGGGCATAAAAGGCTT
TGCTCCCCGAAGCCACCTGTTACCCCAGGCTGCAATCAATAACTCAGGTA
TCCATAGTACCGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_c01.g1 MSMg01no452_c01.g1 CHROMAT_FILE:
MSMg01no452_c01.g1 PHD_FILE: MSMg01no452_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:36 2005
         (355 letters)



>mm_chr5_52515626_52516380
          Length = 755

 Score =  629 bits (325), Expect = 0.0
 Identities = 342/351 (97%), Gaps = 6/351 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   tgacaatggtctctaggagatgacgccacacttagatttgctctgtccagaacacccttc 64
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 205 tgacaatggcctctaggagatgacgccacactcagatttgctctgtccagaacacccttc 264

                                                                       
Query: 65  cttccctatcctgaaaggctagcaaagcccttcgcaagctctagctctgaggctggggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttccctatcctgaaaggctagcaaagcccttcgcaagctctagctctgaggctggggac 324

                                                                       
Query: 125 aagcccttcatggggacagccctctatactggtctcagaggctataacccttgtgtctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagcccttcatggggacagccctctatactggtctcagaggctataacccttgtgtctca 384

                                                                       
Query: 185 cttctccccatgaataccgtttcctgcaagctgagctgcacaccttgggtttctgcattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttctccccatgaataccgtttcctgcaagctgagctgcacaccttgggtttctgcattt 444

                                                                       
Query: 245 agctcaggacctgctcaattcaagttgactggaaaagactgtatagacctttaaaagaac 304
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctcaggacctgctcaatacaagttgactggaaaagactgtatagacctttaaaagaac 504

                                                              
Query: 305 aagaagaagaagaagaagaagaaaaaaagcaatcccctacacagagagccg 355
           ||||||||||||||||||||      |||||||||||||||||||||||||
Sbjct: 505 aagaagaagaagaagaagaa------aagcaatcccctacacagagagccg 549


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)