Query= MSMg01no452_c08.b1 MSMg01no452_c08.b1 CHROMAT_FILE:
MSMg01no452_c08.b1 PHD_FILE: MSMg01no452_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:37 2005
(597 letters)
>mm_chr5_3667785_3668774
Length = 990
Score = 1096 bits (567), Expect = 0.0
Identities = 582/591 (98%), Gaps = 7/591 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgcatctgctagtgctcaaagcaagtagatccccagggccagtagtgtgagtc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgcatctgctagtgctcaaagcaagtagatccccagggccagtagtgtgagtc 263
Query: 64 tctgcacgggtatcaagcagtgtttattgttatttacctgctaaaagaaatagactgggg 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgcatgggtatcaagcagtgtttattgttatttacctgctaaaagaaatagactgggg 323
Query: 124 catatggctgtctgacatctatagtggtatttcctcccaagcatcgaggaacctttcttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catatggctgtctgacatctatagtggtatttcctcccaagcatcgaggaacctttcttg 383
Query: 184 gttgtagtgggtccccggctggttgcccaggcaagctagagagatgtcacagtttctgtg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttgtagtgggtccccggctggttgcccaggcaagctagagagatgtcacagtttctgtg 443
Query: 244 ctgggctgtggactgtgtggtaatttcacaatgcccttgcccccagaaccatcttcttaa 303
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctggg-------ctgtgtggtaatttcacaatgcccttgcccccagaaccatcttcttaa 496
Query: 304 gatattttcttaatcctttcctggctcaatttcttcctattctccagctccaggagacag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gatattttcttaatcctttcctggctcaatttcttcctattctccagctccaggagacag 556
Query: 364 cttggaagcagaggtggtcaggagggggcagagggagagaactattctctcactaggtag 423
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cttggaagcagaggtggtcgggagggggcagagggagagaactattctctcactaggtag 616
Query: 424 ccctgcctgatctagattggctgtgtagaccaaggctgcctcagactcccagagatccgc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccctgcctgatctagattggctgtgtagaccaaggctgcctcagactcccagagatccgc 676
Query: 484 ctgcctctgcctcctgaggactgggattaaaggtgtgcaccaccaccacctgactgtgct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctgcctctgcctcctgaggactgggattaaaggtgtgcaccaccaccacctgactgtgct 736
Query: 544 tgaaagttctctctctctctctctctctctctctctctctctctctctctc 594
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgaaagttctctctctctctctctctctctctctctctctctctctctctc 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 990
Length adjustment: 10
Effective length of query: 587
Effective length of database: 980
Effective search space: 575260
Effective search space used: 575260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_c08.g1 MSMg01no452_c08.g1 CHROMAT_FILE:
MSMg01no452_c08.g1 PHD_FILE: MSMg01no452_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:37 2005
(602 letters)
>mm_chr5_3851584_3852585
Length = 1002
Score = 698 bits (361), Expect = 0.0
Identities = 421/464 (90%), Gaps = 39/464 (8%)
Strand = Plus / Minus
Query: 178 tgagaccttgcctaatcaacggcaacagcaccag---cagcagcag---cagcagcagca 231
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 961 tgagaccttgcctaatcaacggcaacagcaccagcaccagcagcagcaccagcagcagca 902
Query: 232 gcacca-------c--caccaccagcagcagcagcagcagcagcag-------------- 268
|||||| | || || ||||||||||||||||||||||||
Sbjct: 901 gcaccagcagcagcagcagcagcagcagcagcagcagcagcagcaggagcagcagcatca 842
Query: 269 ----------cagcagcagcactaccaacagcagcagcaaaaaatggagcacaactgggg 318
||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 841 ccaccaccaccagcagcagcactaccaacagcagcagcaaaaaatggagcacaactgagg 782
Query: 319 acacatgtagcttgtatattcctatacccatgtgtacccatatgctcctacatgcatcca 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 acacatgtagcttgtatattcctatacccatgtgtacccatatgctcctacatgcatcca 722
Query: 379 tacatacagccacaggaacgcatacatatacaacacatgcatacaatttgaaaaatctcc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tacatacagccacaggaacgcatacatatacaacacatgcatacaatttgaaaaatctcc 662
Query: 439 gagtgaattaaataggaagtaatctacaaaatttttctttgtttcacattgcatttatat 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gagtgaattaaataggaagtaatctacaaaatttttctttgtttcacattgcatttatat 602
Query: 499 gaaataccctgtaaagcatttgtgtagagtgtctctaagccatgtttttttaaacgtagg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaaataccctgtaaagcatttgtgtagagtgtctctaagccatgtttttttaaacgtagg 542
Query: 559 anatgtcacctgtttaaaatacacgtataagcagttgcatgttg 602
| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaatgtcacctgtttaaaatacacgtataagcagttgcatgttg 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
