Query= MSMg01no452_c13.b1 MSMg01no452_c13.b1 CHROMAT_FILE:
MSMg01no452_c13.b1 PHD_FILE: MSMg01no452_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:38 2005
(670 letters)
>mm_chr5_39474426_39475495
Length = 1070
Score = 1263 bits (653), Expect = 0.0
Identities = 668/675 (98%), Gaps = 5/675 (0%)
Strand = Plus / Plus
Query: 1 ggctgctttgaatgttccaacatgaaattgactttaaaatttgatttgggcaaggggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctgctttgaatgttccaacatgaaattgactttaaaatttgatttgggcaaggggcag 260
Query: 61 gaaggcaacaccttaaatcccgagataccacagaaattttgcattaattagtctgcttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggcaacaccttaaatcccgagataccacagaaattttgcattaattagtctgcttaa 320
Query: 121 ttttcagagagacttagacatgggcaataatgtcctcgttttaccaaggaacatagatgg 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ttttcagagagacttagacatgggcaataatgtcctcattttaccaaggaacatagatgg 380
Query: 181 gtgttcttgttttgcttattgatccaacatcaagtctactgtccagacatgggtgggagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgttcttgttttgcttattgatccaacatcaagtctactgtccagacatgggtgggagg 440
Query: 241 ctcaagaacaatggcaaaatttccattacagaccaggttttctgaactctccacttgacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcaagaacaatggcaaaatttccattacagaccaggttttctgaactctccacttgacc 500
Query: 301 caggcttctacctgaacttgtgaagctctgctattgactctgctaactgtaacccagcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggcttctacctgaacttgtgaagctctgctattgactctgctaactgtaacccagcag 560
Query: 361 aacctcagctggagtctgtgtaaacaacatctcccaatagagtctgtcaacttctgtgca 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 aacctcagctggagtctgtgtaaacaacatcttccaatagagtctgtcaacttctgtgca 620
Query: 421 agagaagagactgtttaaaaaagtattccccacttgcttttgtttgtttgtttgtttgtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agagaagagactgtttaaaaaagtattccccacttgcttttgtttgtttgtttgtttgtt 680
Query: 481 t----tttctttttggttttttcgagacagggtttctctgtatagccctggctgtcctgg 536
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttttttctttttggttttttcgagacagggtttctctgtatagccctggctgtcctgg 740
Query: 537 agctcactttgtagaccaggctggcctcgaactcagacatctgcctgcctctgcctcccg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agctcactttgtagaccaggctggcctcgaactcagacatctgcctgcctctgcctcccg 800
Query: 597 agtgctgggattaaaggcgtgcgccaccacgcccgcccggcgcttttttttt-gaaaagt 655
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 801 agtgctgggattaaaggcgtgcgccaccacgcccgcccggcgcttttttttttgaaaagt 860
Query: 656 ttctttttctcctaa 670
|||||||||||||||
Sbjct: 861 ttctttttctcctaa 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_c13.g1 MSMg01no452_c13.g1 CHROMAT_FILE:
MSMg01no452_c13.g1 PHD_FILE: MSMg01no452_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:38 2005
(590 letters)
>mm_chr5_39656244_39657228
Length = 985
Score = 1073 bits (555), Expect = 0.0
Identities = 580/591 (98%), Gaps = 7/591 (1%)
Strand = Plus / Minus
Query: 1 attcaatgtgtgcaaagtacatctcaggtctaaccatctccttgcctctttttatgccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 attcaatgtgtgcaaagtacatctcaggtctaaccatctccttgcctctttttatgccta 726
Query: 61 atgtcaatatgctctattcttgaatagcttccttgtgcattcatagcacatgccaggaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gtgtcaatatgctctattcttgaatagcttccttgtgcattcatagcacatgccaggaaa 666
Query: 121 atgaaacatctcccctctggcttttctatttgtgcataaagaaatagttttatgagcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 atgaaacatctcccctctggcttttctatttgtgcataaagaaatagttttatgagcaaa 606
Query: 181 tctgtgaacataagagttgctgcaattttatagactccaattacataatttcatttaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tctgtgaacataagagttgctgcaattttatagactccaattacataatttcatttaaaa 546
Query: 241 ttttaatggtatttttaattgcattgtgcttaaaaaactactact-tctagaaggcagag 299
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 545 ttttaatggtatttttaattgcattgtgcttaaaaaactactactat-tagaaggcagag 487
Query: 300 agtggaagtttgaacccttcacagctctatagtaaaaggaaatcactgccatcattcact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agtggaagtttgaacccttcacagctctatagtaaaaggaaatcactgccatcattcact 427
Query: 360 aggagacagggttctagacttcagtccctcctatctataactctgaactggtgcttgtta 419
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 426 aggagacagggttctagacttcagcccctcctatctataactctgaactggtgct----- 372
Query: 420 tgttattgttgtattgggcatcatgcagtttttaacttttatttcttttggctttcaaaa 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgttattgttgtatcgggcatcatgcagtttttaacttttatttcttttggctttcaaaa 312
Query: 480 ttcatcttataaagtaaaaatttaacacctcgggcctaatttatctgattaataatttca 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttcatcttacaaagtaaaaatttaacacctcgggcctaatttatctgattaataatttca 252
Query: 540 ctatactgatctctaatatgttttgaaattgtatggttatggggttctagg 590
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctatactgatctctaatatgttttgaaattgtatggttatggggttctagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 985
Length adjustment: 10
Effective length of query: 580
Effective length of database: 975
Effective search space: 565500
Effective search space used: 565500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
