BAC Information

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BAC

Clone NameMSMg01-452F07
Chromosome5 (Build37)
Map Location 14,240,148 - 14,240,844
singlet/doubletsinglet
Overlap geneSema3e
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452F07.T7 (MSMg01no452_f07.b1)MSMg01-452F07.TJ (MSMg01no452_f07.g1)
ACCAG539608AG539609
length766769
length of high quality
(start - end)		697 (50 - 746)626 (78 - 703)
definitionCHROMAT_FILE: MSMg01no452_f07.b1 PHD_FILE: MSMg01no452_f07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:51 2005CHROMAT_FILE: MSMg01no452_f07.g1 PHD_FILE: MSMg01no452_f07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAATTTTTGTAAACATTTAAAGAAAAGTGTTGTATAGATTT
TTTTTAATTTTGTTTTTTTTTTGTTTGTTTGTTTGTTTGTTTTTTGTTTT
TCGAGACAGGGTTTCTCTGTATAGTCTTGGCTGTCCTGGAACTCACTTTG
TAGACCAGGCTGGCCTCAGAAATCCGCCTGTCTCTGCCTCCCGAGTGCTG
GGATTAAAGGTGTGCGCCACCACCAACCAGCTAGATCTTTTAACCATCAG
AAATACTCCACAGAAATAAAAGTGTAGAGCTTGGACTTTGTGCTAGTTTT
ATGTAACAGATCATTTTTTTTTCTGACAACAGAATTTTGCTGGAATCTTC
AATGTGGTTGGCTGTATTTTGAACCACAGGAAATTGAAATCTCAGAATGT
CCTAAATTTTCTTTCTTCCAGGAGGTTCCGCAGGCAGGACGTTCGGCATG
GCAACGCCGCCCAACAGTGCTTTGGACAGCAATTTGTTGGTAATTCTTAG
AAAAATCGATTGTTATGATTTACCCAATGTATTATAAAGATGGACTACAC
ATTTCTTTAAATGAATCATTTTCTAGTAGATGATGAAGTGGGTTAGAATG
TGGCATCTGGGAACTTGGCTCTAAAATATGGAGCAGTAAGGACAATCTAC
TTGCCCTCTTAATTTCTGTATTCTCAGTGACTGACTTAAATGACTGCCTA
GAAATTAGCAACCAGG

NCCCAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAATGTAAGACAGTCATGA
AAACCAACTAAGAAATAAAAAGGGCAACAGAAACAAAGGAACAAAATACC
CATTCAACCAAGACAAGACTAAGTATCAACACTTAAAATTGCAAACTTCC
CAAACACAGATTGATCACATACTGGATACAAAGAAAGTCCCAGCAGACAT
AAGTAAAATTGAAATAGGTTCCTATTTGTTATATAACCACTATAGAATAA
ACTGGATATCAACAACAGAAAAAAATAGAAGTTTACAAACTTGTAAAAGC
TGGACAACTTTCTACTGAGTGAAAAAATAGGTGAAGACAAAAACTAAGAA
AGAAATTAAAGTCTTTCTCAAACTGAATGAAAATAAATACACAGGACACC
CAAAATTATGAGACCCAATGAAGACAGTTCTAAGAAGCAAATTCATAACA
CTAAGCTCCTTCACTGAACAAGAAAAGTAGGAACTTAACAGTACACCTGG
AAGTTCTAGATCAAACAATAAAACAAAGAATTGGTTATTTGATAAATCGC
TAAGATTGAAAGATTCCTCTCCAAATTAACTAAAAGTTTGTGAAAGAGGA
ACCAAATAAATAGAATTAAAGATAATCAGGGGGCCTTAAATATGGACACT
AGAAGGAATCCAGAGGATTGTACCTCAAGACGCAGTATCCAAATGTATTC
AAAGTACACTTCATCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_f07.b1 MSMg01no452_f07.b1 CHROMAT_FILE:
MSMg01no452_f07.b1 PHD_FILE: MSMg01no452_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:51 2005
         (697 letters)



>mm_chr5_14239946_14241044
          Length = 1099

 Score = 1274 bits (659), Expect = 0.0
 Identities = 687/697 (98%), Gaps = 3/697 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaatttttgtaaacatttaaagaaaagtgttgtatagatttttttt-aatttt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 203 ggaattcaaatttttgtaaacatttaaagaaaagtgttgtatagatttttttttaatttt 262

                                                                       
Query: 63  gttttttttttgtttgtttgtttgtttgttttttgtttttcgagacagggtttctctgta 122
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttttttttttttttgtttgtttgtttgttttttgtttttcgagacagggtttctctgta 322

                                                                       
Query: 123 tagtcttggctgtcctggaactcactttgtagaccaggctggcctcagaaatccgcctgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tagtcttggctgtcctggaactcactttgtagaccaggctggcctcagaaatccgcctgt 382

                                                                       
Query: 183 ctctgcctcccgagtgctgggattaaaggtgtgcgccaccaccaaccagctagatctttt 242
           ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||
Sbjct: 383 ctctgcctcccgagtgctgggattaaaggcgtgcgccaccaccgcccagctagatctttt 442

                                                                       
Query: 243 aaccatcagaaatactccacagaaataaaagtgtagagcttggactttgtgctagtttta 302
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaccatcagaaacactccacagaaataaaagtgtagagcttggactttgtgctagtttta 502

                                                                       
Query: 303 tgtaacagatcatttt--tttttctgacaacagaattttgctggaatcttcaatgtggtt 360
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtaacagatcattttcttttttctgacaacagaattttgctggaatcttcaatgtggtt 562

                                                                       
Query: 361 ggctgtattttgaaccacaggaaattgaaatctcagaatgtcctaaattttctttcttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggctgtattttgaaccacaggaaattgaaatctcagaatgtcctaaattttctttcttcc 622

                                                                       
Query: 421 aggaggttccgcaggcaggacgttcggcatggcaacgccgcccaacagtgctttggacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aggaggttccgcaggcaggacgttcggcatggcaacgccgcccaacagtgctttggacag 682

                                                                       
Query: 481 caatttgttggtaattcttagaaaaatcgattgttatgatttacccaatgtattataaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 683 caatttgttggtaattcttagaaaaatcgattgttatgatttacccaatgtattacaaag 742

                                                                       
Query: 541 atggactacacatttctttaaatgaatcattttctagtagatgatgaagtgggttagaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atggactacacatttctttaaatgaatcattttctagtagatgatgaagtgggttagaat 802

                                                                       
Query: 601 gtggcatctgggaacttggctctaaaatatggagcagtaaggacaatctacttgccctct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gtggcatctgggaacttggctctaaaatatggagcagtaaggacaatctacttgccctct 862

                                                
Query: 661 taatttctgtattctcagtgactgacttaaatgactg 697
           ||||||||||||| |||||||||||||||||||||||
Sbjct: 863 taatttctgtattgtcagtgactgacttaaatgactg 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1099
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1089
Effective search space:   748143
Effective search space used:   748143
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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