BAC Information

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BAC

Clone NameMSMg01-452F12
Chromosome5 (Build37)
Map Location 10,725,512 - 10,725,827
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream geneLOC100042768, LOC625446, LOC435832, LOC381612, EG625586, LOC242809
Downstream geneLOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452F12.T7 (MSMg01no452_f12.b1)MSMg01-452F12.TJ (MSMg01no452_f12.g1)
ACCAG539618AG539619
length713743
length of high quality
(start - end)		---616 (83 - 698)
definitionCHROMAT_FILE: MSMg01no452_f12.b1 PHD_FILE: MSMg01no452_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:52 2005CHROMAT_FILE: MSMg01no452_f12.g1 PHD_FILE: MSMg01no452_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCTTTCCCTTTCTTTGGNCGGGGGCCCNNNCTTTTCTAATAAATTTG
CGGGCCGCCCTAATACGAAACTTCACTTCCTGCTCGAAAANAGGGATGCC
GNNCGNGNAAAATNTNCCAAATTTTTTGCTCTCTTTAACCCTTTTTTTTT
AAAAAAAGGGTTGGGNTTTTTTGGGCCCCCAAAATTTTTTTTTTTCCCAA
ATTTTGGGGGTTTTTTTTTCCCCAAAAANNNATTAAAAACCATTCCAAGG
AACCAAAAATTAAAGGGAAAAGGCCCCCCCCTTTGGGGGGGGGTTCCAAC
AATAAAAAAATTTTTTTTTTTTTGGGGGGGGGGCTCCCCCAAAAACAAAA
AACCCCCCCATAAAAATTTTTTTAAAAAAAAAATTTGGGGGGGGGGGGGG
GCGGGTANGTAAAAAAATATTTCCCCCCCCCCCCCACAAAAGGGGGGGGG
GGGGGTTTTTTTTTTGGGCCCCCCATAATTTTTTTTTTTTCCCCCCCCCA
CCCAAGAGGGGGGCGCCAACAAAAAATTCCCCCCCCCACACAAGGGTGGT
GGGGTGCCCCCCCCCCCCCCCCAACAAAAAAAAAAAGAAGAGAGTGTTNT
NTTTTTCTTTTATAAAAAAAAAAAAAGAATAACATATACANATATTATTT
TTTTTCTTTTATAAAATAATTTATNCTTTGTTGTGTGGGGGGGAGAAGAG
ACACCGACCCCCC

NNNNCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAGGGGCCAGGTCACCA
GACATATCTAGAAACTATTTCTTCTTTTTCAGGTAATCTGTCTTTTAACC
ACAGAGAACCCATTTATAGGAAGTCAGCTGTTCCACATGACTGAGGCTTG
TCTTAGTTACTTTTCTATTCTTTTGATAAAACACTATGACTAGTACAACT
TATAAAAGAAAAATTTTAAGTTGACTTATGGCTTTAGAGGATTAGAGTCC
ATGATGGCAAAGAAAAGGAATAAGAAAGAACCCAAATGCCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAG
CTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATTGACCTG
GAGGGCATCATCTTGAGTGAGGTAACCCAATCACAAAAGAACTCACATGA
TATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCCAA
GATATAAGATACAATTTGCGAAACACATGAAACTCAAGAAGAACGAAGAC
CAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAATACCCAT
GGAAGGAGTTACAGAGACAAAGTTTAGAGCTGAGATGAAAGGATGGACCA
TCCAGAGACTGCCATACCCAGGGATCCATCCCATAATCAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_f12.g1 MSMg01no452_f12.g1 CHROMAT_FILE:
MSMg01no452_f12.g1 PHD_FILE: MSMg01no452_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:52 2005
         (616 letters)



>mm_chr5_10725512_10726527
          Length = 1016

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   aggggccaggtcaccagacatatctagaaactatttcttctttttcaggtaatctgtctt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aggggccaggtcaccagacatatctagaaactatttcttctttttcaggtaatctgtctt 257

                                                                       
Query: 63  ttaaccacagagaacccatttataggaagtcagctgttccacatgactgaggcttgtctt 122
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttaaccacagagaaaccatttataggaagtcagctgttccacatgactgaggcttgtctt 197

                                                                       
Query: 123 agttacttttctattcttttgataaaacactatgactagtacaacttataaaagaaaaat 182
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 196 agttacttttctattcttttgataaaacaccatgactagtacaacttataaaagaaaaaa 137

                                                                       
Query: 183 tttaagttgacttatggctttagaggattagagtccatgatggcaaagaaaaggaataag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tttaagttgacttatggctttagaggattagagtccatgatggcaaagaaaaggaataag 77

                                                                       
Query: 243 aaagaacccaaatgcccctcaacagaggaatggatacagaaaatgtggtacatttacaca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  aaagaacccaaatgcccctcaacagaggaatggatacagaaaatgtggtacatttacaca 17

                           
Query: 303 atggagtactactcag 318
           ||||||||||||||||
Sbjct: 16  atggagtactactcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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