Query= MSMg01no452_p15.b1 MSMg01no452_p15.b1 CHROMAT_FILE:
MSMg01no452_p15.b1 PHD_FILE: MSMg01no452_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:42 2005
(575 letters)
>mm_chr5_55521771_55522747
Length = 977
Score = 855 bits (442), Expect = 0.0
Identities = 470/480 (97%), Gaps = 2/480 (0%)
Strand = Plus / Plus
Query: 1 gcaaataatgtattttaatcaaaaccatcccactttaccaatactccacctatacccgac 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 gcaaataatgtattttaatcaaaaccatcctactttaccaatactccacctatacccgac 260
Query: 61 caccaacatttgtcactctcaagtttatgagttctgcttatcaaactcactgaaaccact 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 caccaacatttgtcactctcaagtttatgagttctgtttatcaaactcactgaaaccact 320
Query: 121 aggtcctttgcttacactgtggccacttacaagctggattatgcacgctcttgtaaaaga 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtcctctgcttacactgtggccacttacaagctggattatgcacgctcttgtaaaaga 380
Query: 181 tgaagaaagtatactttttgcagtagttaaattaaagctgagaaaatataaatcttggag 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagaaagtatactttctgcagtagttaaattaaagctgagaaaatataaatcttggag 440
Query: 241 aaggtactaagaataagatgtgttctggatgttaattagtttaccacaggagtattgtca 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagttactaagaataagatgtgttctggatgttaattagtttaccacaggagtattgtca 500
Query: 301 catgaggaaaataat--gtttcaatgtttttgtttatacattaatgcctcatgtaacttt 358
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgaggaaaataataagtttcgatgtttttgtttatacattaatgcctcatgtaacttt 560
Query: 359 aactggattcatatagaggacaatatggaaactgtcaagttgacaagttggaaatgtttt 418
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactggattcatgtagaggacaatatggaaactgtcaagttgacaagttggaaatgtttt 620
Query: 419 gttgaaagatcttttctgttctggagtactgtaactttaatttttttaaatcctatttta 478
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 gttgaaagatcttttctgttctggagtactgtaactttaattttttaaaatcctatttta 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 977
Length adjustment: 10
Effective length of query: 565
Effective length of database: 967
Effective search space: 546355
Effective search space used: 546355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_p15.g1 MSMg01no452_p15.g1 CHROMAT_FILE:
MSMg01no452_p15.g1 PHD_FILE: MSMg01no452_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:42 2005
(341 letters)
>mm_chr5_55667540_55668280
Length = 741
Score = 594 bits (307), Expect = e-174
Identities = 327/341 (95%), Gaps = 12/341 (3%)
Strand = Plus / Minus
Query: 1 agtagccagtcagtcagtaagtttcaagttcaatggcctctgggccatgcttaacaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agtagccagtcagtcagtaagtttcaagttcaatggcctctgggccatgcttaacaattc 429
Query: 61 atatgaaggggttatcccatgcaaggcactggcattttcaattaagagcctactaattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atatgaaggggttatcccatgcaaggcactggcattttcaattaagagcctactaattca 369
Query: 121 tgttaaggcatattcatgtgaatcatgatccaagtttatagtggcagtaaagtaatgatg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 368 tgttaaggcatattcatgtgaatcatgatccaagtttatagtggccgtaaagtaatgatg 309
Query: 181 aggaaatacaacttgtattgtgtttgttaaactgtggtgactggggataaaatcttgaga 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 308 aggaaatacaacttgtattgtgtttgttaaactgtggtaactggggataaaatcttgaga 249
Query: 241 tctgctcacactaggccaatgcctcaccaccataccaaaacctcagtcctgcatggtatc 300
|||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 248 tctgctcacactaggccaatgcctcaccaccataccaaaacctcag------------tc 201
Query: 301 tcttgcagaactgaaagtgcaaatatagaaagaatagaaaa 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tcttgcagaactgaaagtgcaaatatagaaagaatagaaaa 160
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
