NNNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGGAGACTGGTTCCAGGACTCTGCTCAGACATTAAGGAT
GCTAAAGTACTTCCCTAAAAGTGGACAAGCTGCTTGTAGCCTGCCGCCTC
CCACTAACTCCATCATCTCCAGCTTACTTTGAACAAAGACAAGGTAAGTG
TTGTGTGACTACTGTTATACTGAATTGATCAGGGGTGAAAGACAAGGAAA
ACTCTATTTGGCACAGTAATGGTTAAGTATCTTTTCTCCACAGTCAACTG
ACTGCACAGGAGCTGCCTCCACAGAGGAGCTGTGCCTGTAGCAGTTTCAC
TGAACAGTTGTGAGAGCAGTGTGAATATCACATGTAAATGTTGGTGCTTT
GCATATTAAAGCTTTGAGACAGAGAGAGAGAGTTTCGGTTACATTTAAAT
CAGCATATGTCACACACACCCCGCCCCCTGCCATTGCAGCCTTCTCTTCC
AGTGAGCCTCATAGCCCACAACCACTTTGTTTTTGTCTTCCAGCCAGACA
TATTGGACTGGGGAGCCACATTGGGCTGAGGAAATGGCTCGGAGGGTAAA
GTCCTCGCTGTGAAAGCACGAGGATCAGTGCTCAGATTCCCAGAATGCAC
GTAACGACAGATGTGATAACACACATCTGTGATTCCGGGGCTCCTAGGGC
AAGGCAGGAAGACCAGAGACTCCTGAGAAGTTCATCGTCCAGTTGGCCCA
GTGTAC

NTAAAGCTTTCCNCCCCCTGGCTCTCTCAAATTTTTTTGACACTATATTA
AAAATTTTCCCCAAAAAACAAAAAAACAAATTTTAATTTTTTTTCTTTTG
AACGTGGATTTTTAGGCGGGGGAAAAAGGGGAGTGAGTGTTGGTTGTTTT
AGTTATAATATGTGGTTTGGGGTGTAGGGGGGGGAGGAGAGGGGGTTGGG
GGGGGGGTGTGGGTTTTTTTTTTTTTAAAAAAATTTAATTATATTTATTT
TTTTTTGTTTTGTGGGTGTACACAAAAAAANCCNNNNNAAAANNNNNNNN
NNNANANAAAAANNAAAAAANNNNNNAAAAAAAAANAAAAAAAAAAANAN
NNNNAAAAAAAANNNNAAAAANANTTTNNNNNNNNNNNNNNNNNNAAAAA
AATAAANNNNATNATATAAAATATTTTTTNNNNTTNNATANTAAANNNNA
AATAAAAAATNNNAAAAAAAAAAAAANAAAAAAAAAAAATATAANNATTT
TATAANAAAATNNTNNNTTNNNNNNNNNNNNNNNNNNNNNNAANNAAAAA
NNNNNNNNNNNAANAAAANNNNAAAAAAAAAAAAAANNNNNAAAANNNNN
NTNNNNNNNNNAAAAANNAAATAAATTTTTTTAAATAAAAAAAAAAAAAA
NATTTTTTTATTTTNCANNCNNAANCNNNNAAAAANNNTNTNNCCTNACT
TTATNCCNAAATCAACNNCAAATACAAAAAAATAAAAAACCNTTCANNAC
CATACAACCTTTTTTCTTTCTTCTAAACACAATAATTATAAAACAAAAAA
AAACCACANTCCCTACTCCCAAAACAAAACACTAACATATTTNAAACTAA
AACAACAAACAACAAAAATAATAATAAACAATTTTTAAAACATAAATTTT
ATTATTTTATTATTTTGTTTTT

Query= MSMg01no453_a08.b1 MSMg01no453_a08.b1 CHROMAT_FILE:
MSMg01no453_a08.b1 PHD_FILE: MSMg01no453_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:45 2005
         (697 letters)



>mm_chr5_91027651_91028743
          Length = 1093

 Score = 1189 bits (615), Expect = 0.0
 Identities = 673/697 (96%), Gaps = 12/697 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggagactggttccaggactctgctcagacattaaggatgctaaagtacttcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 gaattccaggagactggttccaggactctgctcagacattaaggatgctaaagtacttcc 852

                                                                       
Query: 65  ctaaaagtggacaagctgcttgtagcctgccgcctcccactaactccatcatctccagct 124
           ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct: 851 ctaaaagtggacaagctgcttgtagcctgccacctcccacttactccgtcatctccagct 792

                                                                       
Query: 125 tactttgaacaaagacaaggtaagtgttgtgtgactactgttatactgaattgatcaggg 184
           |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 791 tactttgaacaaggacaaggtaagtgatgtgtgactactgttatactgaattgatcaggg 732

                                                                       
Query: 185 gtgaaagacaaggaaaactctatttggcacagtaatggttaagtatcttttctccacagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gtgaaagacaaggaaaactctatttggcacagtaatggttaagtatcttttctccacagt 672

                                                                       
Query: 245 caactgactgcaca---ggagctgcctccacagaggagctgtgcctgtagcagtttcact 301
           ||||||||||   |   |||||||||||||||||||||||||||||||   |||||||||
Sbjct: 671 caactgactg---agtgggagctgcctccacagaggagctgtgcctgt---agtttcact 618

                                                                       
Query: 302 gaacagttgtgagagcagtgtgaatatcacatgtaaatgttggtgctttgcatattaaag 361
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 617 gaacagttgtgagagcagtgtgaatatcacatgtaaatgttggtgctctgcatattaaag 558

                                                                       
Query: 362 ctttgagacagagagagagagtttcggttacatttaaatcagcatatgtcacacacaccc 421
           |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctttgagac--acagagagagtttcggttacatttaaatcagcatatgtcacacacaccc 500

                                                                       
Query: 422 cgccccctgccattgcagccttctcttccagtgagcctcatagcccacaaccactttgtt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cgccccctgccattgcagccttctcttccagtgagcctcatagcccacaaccactttgtt 440

                                                                       
Query: 482 tttgtcttccag-ccagacatattggactggggagccacattgggctgaggaaatggctc 540
           |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 tttgtcttacagcccagacatattggactggggagccatattgggctgaggaaatggctc 380

                                                                       
Query: 541 ggagggtaaagtcctcgctgtgaaagcacgaggatcagtgctcagattcccagaatgcac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggagggtaaagtcctcgctgtgaaagcacgaggatcagtgctcagattcccagaatgcac 320

                                                                       
Query: 601 gtaacgacagatgtgataacacacatctgtgattccggggctcctagggcaaggcaggaa 660
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 319 gtaacgccagatgtgataacacacatctgtgatcccggggctcctagggcaaggcaggaa 260

                                                
Query: 661 gaccagagactcctgagaagttcatcgtccagttggc 697
           ||||||||||||||||||||||| |||||||||||||
Sbjct: 259 gaccagagactcctgagaagttcgtcgtccagttggc 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1093
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1083
Effective search space:   744021
Effective search space used:   744021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)