BAC Information

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BAC

Clone NameMSMg01-453A16
Chromosome5 (Build37)
Map Location 86,818,403 - 86,818,790
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d
Downstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453A16.T7 (MSMg01no453_a16.b1)MSMg01-453A16.TJ (MSMg01no453_a16.g1)
ACCAG540150AG540151
length765766
length of high quality
(start - end)		712 (46 - 757)610 (76 - 685)
definitionCHROMAT_FILE: MSMg01no453_a16.b1 PHD_FILE: MSMg01no453_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:47 2005CHROMAT_FILE: MSMg01no453_a16.g1 PHD_FILE: MSMg01no453_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCAAGGCTGCCTGTATAGCCTTCATGTGGAGTTAGTCATTGGAG
TCTGGCGGTGTCATCAACTAAAAACAAGAACACTCCAAATCCCAGACAAC
ATACAACATCGCTTGTTAATCATTGAGGTATGTGACTTTCAGTGTTCCTT
CCCTATCAATCCCTGCCTATTGTCAGCTCCATTCTTGGGTAGACCCTGTA
CAGACAACCACAGCTAGTAATCTTGCGATTGTAGTTTGCTGTTGTTGTTG
TTGTTGCTGTTGGGCTATTTTTTTTCATCTTGCACTGAAAATGCATCCCA
TTTCCCCATATTTTGAATTGTACATTCTTTTAGTCCCTCTTCTGCAATGT
CCCTGAGCCTTACAAGGTATTATATAAACATGTTGTTTACAGCTGAGCAG
GCAACTGTTACTTATCAACACCTTAAGTAGTCTTAAGTTTCTACATTCAT
TGGAAAGAGGAGCTTCTCTGATTAAAGCGGAGAGTAGCATTTGCCCTTGA
GTATAAATATATATATTTTATGCTTTCTATGTTATATCTCTTTGTTTAAA
AACAGTATTAGGTTTCCTGTGTAGACTGGTGATAACCCCTGCCATGCTTT
TTTTTTTTCTTTTTTGTGCCTTTTGCTTTTTGTTTATTTTACTGGATTTA
CAGAATTACAAATAGATTCCCTCCTGTGGAGGAGTCCTGAAAAAAAAAAT
CAAAGAATAGTTGAA

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCCGGCGAGATACTAGCTCAGGC
GAGAGACTGTCACTTTTGTTTTGATCTTAGCCATTCTGACAGGTGTAGGA
TGGAATCTTAGAGTAGTTTTGATTTGCATTTCCCTGATGGCTAAGGATGT
TGAACATTTCTTTAACTGTTTTTCAGTCATTTGGGATTTCTATATTGAGA
ATTCTCTATTTAGATCTATTTTAAAATTGTATTATTTTGTTTGTTGATGT
CTAGGTCCTTGAATCCTTTGTATATTTTGTTTACTAGCCTTATCAGAGGT
GAACTTGGTGAACATTTTTTCCCATTCTGTAGGTTGCCATTTTGTCCTAT
TGCCTTTGTCCCAGTGTCCTTTGCCTTACAGAAGCTGTTCAGTTTCATGA
TGTTCCATTTATTAATTATTGATAAAGAAGCCAGAAATACACAATGGAAA
AAGAAAGTGTCTATAACAAATGTTGCTGGTCTAATTGGATGCCTGTATGT
AGAAAAATGGGAATAGATCCATATATATTTTTTTACCCTGAACAAATATC
AAATCCAAGTGGATCAAAGACCTCAATATAAAACTAGACACAGTCAACCT
GATAGAAAAGAAAGCAGGTAACAGTCTTTTATGCATCGGCACAGGATACA
ACTTCCTAAAAGTAGAGACTCTCTTAAAGAGTGAAAATCTTTTTCATCAG
ACACTACCCCCAGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_a16.b1 MSMg01no453_a16.b1 CHROMAT_FILE:
MSMg01no453_a16.b1 PHD_FILE: MSMg01no453_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:47 2005
         (712 letters)



>mm_chr5_86817680_86818790
          Length = 1111

 Score =  737 bits (381), Expect = 0.0
 Identities = 387/389 (99%), Gaps = 1/389 (0%)
 Strand = Plus / Minus

                                                                        
Query: 324  tgtacattcttttagtccctcttctgcaatgtccctgagccttacaaggtattatataaa 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1111 tgtacattcttttagtccctcttctgcaatgtccctgagccttacaaggtattatataaa 1052

                                                                        
Query: 384  catgttgtttacagctgagcaggcaactgttacttatcaacaccttaagtagtcttaagt 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 catgttgtttacagctgagcaggcaactgttacttatcaacaccttaagtagtcttaagt 992

                                                                        
Query: 444  ttctacattcattggaaagaggagcttctctgattaaagcggagagtagcatttgccctt 503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991  ttctacattcattggaaagaggagcttctctgattaaagcggagagtagcatttgccctt 932

                                                                        
Query: 504  gagtataaatatatatattttatgctttctatgttatatctctttgtttaaaaacagtat 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931  gagtataaatatatatattttatgctttctatgttatatctctttgtttaaaaacagtat 872

                                                                        
Query: 564  taggtttcctgtgtagactggtgataacccctgccatgctttttttttttcttttttgtg 623
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 871  taggtttcctgtgtagactggtgataacccctgccatgctttttttttt-cttttttgtg 813

                                                                        
Query: 624  ccttttgctttttgtttattttactggatttacagaattacaaatagattccctcctgtg 683
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  ccttttgctttttttttattttactggatttacagaattacaaatagattccctcctgtg 753

                                         
Query: 684  gaggagtcctgaaaaaaaaaatcaaagaa 712
            |||||||||||||||||||||||||||||
Sbjct: 752  gaggagtcctgaaaaaaaaaatcaaagaa 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1111
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1101
Effective search space:   772902
Effective search space used:   772902
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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