Query= MSMg01no453_i17.b1 MSMg01no453_i17.b1 CHROMAT_FILE:
MSMg01no453_i17.b1 PHD_FILE: MSMg01no453_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:27 2005
(552 letters)
>mm_chr5_116109270_116110221
Length = 952
Score = 725 bits (375), Expect = 0.0
Identities = 399/407 (98%)
Strand = Plus / Minus
Query: 97 aattttctaaaaattttactttggctgctttgcttatcaaagtgaggaccttgtttcatt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 aattttctaaaaattttactttggctgctttgcttatcaaagtgaggaccttgtttcatt 893
Query: 157 gagaaacacagtttaaatataggttctctactatgtaagttgatagccaggcatggtggt 216
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 892 gagaaacacagtttaaatataggttctctactacgtaagttgatagccaggcatggtggt 833
Query: 217 gcacacctttgatccagcactcgggaggcagaggcaggcagatctgtatgagtttagggc 276
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 832 gcacacctttgatccagcactcgggaggcagaggcaggcagatatatgtgagtttagggc 773
Query: 277 cagcctggtctacacagtgagtttcaggacagccatggctgttacacagagaaaccctgt 336
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 772 cagcctggtctacacagtgagtttcaggacagccagggctgttacacagagaaaccctgt 713
Query: 337 ctcaaaaaagaaagaaagagaagaaaaggaaaccaaaacaaaagttggtttgatgtctgg 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ctcaaaaaagaaagaaagagaagaaaaggaaaccaaaacaaaagttggtttgatgtctgg 653
Query: 397 tttagtccagttcctgtgagctccctttcagagagtgctctaggcttggatgtcttttcc 456
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cttagttcagctcctgtgagctccctttcagagagtgctctaggcttggatgtcttttcc 593
Query: 457 agaatactcaaaaaagaaacccctcggccacacccacacccactgac 503
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agaatactcaaaaaagaaacccctcggccacacccacacccactgac 546
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_i17.g1 MSMg01no453_i17.g1 CHROMAT_FILE:
MSMg01no453_i17.g1 PHD_FILE: MSMg01no453_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:27 2005
(682 letters)
>mm_chr5_115953233_115954314
Length = 1082
Score = 1292 bits (668), Expect = 0.0
Identities = 677/682 (99%), Gaps = 4/682 (0%)
Strand = Plus / Plus
Query: 1 catttcactaaggcgttggttaagtaaatgctggctggggtgcatcactcagcactgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 catttcactaaggcgttggttaagtaaatgctggctggggtgcatcactcagcactgtta 264
Query: 61 tgggttaagtaaatgcgggtaagacgagccacagcaggggtcctcaaccttcctgaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgggttaagtaaatgcgggtaagacgagccacagcaggggtcctcaaccttcctgaagaa 324
Query: 121 gctgccaccctctaacacagttcctcatgctgtggtgacccccgtcccccgccatacaat 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctgcc----tctaacacagttcctcatgctgtggtgacccccgtcccccgccatacaat 380
Query: 181 cattttcgatgctactctataactgtaattttgctactgttatgaattgtaagataaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattttcgatgctactctataactgtaattttgctactgttatgaattgtaagataaata 440
Query: 241 actctttttccaatggtcttaggagacccgtgtgaaagggtcctttgatgccccaaaggg 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 actctttttccaatggtcttaggagacccgtgtgaaagagtcctttgatgccccaaaggg 500
Query: 301 atcaagatccacaggttgagcactgtggatctagaaactggagatagcggggctgggggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaagatccacaggttgagcactgtggatctagaaactggagatagcggggctgggggg 560
Query: 361 ctgggggactggggagctgggggggtagcttagtcagtttagtgtttgcccagcatttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgggggactggggagctgggggggtagcttagtcagtttagtgtttgcccagcatttat 620
Query: 421 gaaactgggttctgtcctcagtactgacagaaccagacatggtgggccacacctgagatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaactgggttctgtcctcagtactgacagaaccagacatggtgggccacacctgagatc 680
Query: 481 ctagcactcttgcaagaggatcagaaagtccaaggccatctttggcctttgttttaaggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctagcactcttgcaagaggatcagaaagtccaaggccatctttggcctttgttttaaggc 740
Query: 541 tgtcctgggatacatgagacccaaaacaaagcgaaacaataacaatatcacaaacgccta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtcctgggatacatgagacccaaaacaaagcgaaacaataacaatatcacaaacgccta 800
Query: 601 ttagtcacattattggacttcaaatagttttaattttgtctcttagtttatctgtatttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttagtcacattattggacttcaaatagttttaattttgtctcttagtttatctgtatttt 860
Query: 661 tttgtaaagatttattatacat 682
||||||||||||||||||||||
Sbjct: 861 tttgtaaagatttattatacat 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
