Query= MSMg01no454_a08.b1 MSMg01no454_a08.b1 CHROMAT_FILE:
MSMg01no454_a08.b1 PHD_FILE: MSMg01no454_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:05 2005
(267 letters)
>mm_chr5_41807614_41808278
Length = 665
Score = 462 bits (239), Expect = e-135
Identities = 256/262 (97%), Gaps = 2/262 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtatttaaccaacaaacagcccactgtctccatgaagaaattgtctcctagat 64
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaattcagtattcaatgaacaaacagcccactgtctccatgaagaaattgtctcctagat 405
Query: 65 cttttttgcagttttgatgtcggctccccatgaccaacccntcagttntctgagtgtctt 124
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 404 cttttttgcagttttgatgtcggctccccatgaccaaccc-tcagtt-tctgagtgtctt 347
Query: 125 caagccatgccctttctatttgagtgttctcactgtcagcagaatgaaatattgtgagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 caagccatgccctttctatttgagtgttctcactgtcagcagaatgaaatattgtgagtt 287
Query: 185 atcatcaaaggtttgctgatataatgagtataatttaattaatgaattaaggtctagcac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atcatcaaaggtttgctgatataatgagtataatttaattaatgaattaaggtctagcac 227
Query: 245 aggcagttagcanaatacaagg 266
|||||||||||| |||||||||
Sbjct: 226 aggcagttagcaaaatacaagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 665
Length adjustment: 9
Effective length of query: 258
Effective length of database: 656
Effective search space: 169248
Effective search space used: 169248
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no454_a08.g1 MSMg01no454_a08.g1 CHROMAT_FILE:
MSMg01no454_a08.g1 PHD_FILE: MSMg01no454_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:05 2005
(241 letters)
>mm_chr5_41654225_41654866
Length = 642
Score = 455 bits (235), Expect = e-132
Identities = 238/239 (99%), Gaps = 1/239 (0%)
Strand = Plus / Plus
Query: 1 atgtatgacaccaaaaaa-cttctctatttttaaaaaaagaacaatatctttaacagcat 59
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtatgacaccaaaaaaacttctctatttttaaaaaaagaacaatatctttaacagcat 260
Query: 60 aattcaataatctctgaaattcatcagtactactggaatacttatcatcttcattttata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattcaataatctctgaaattcatcagtactactggaatacttatcatcttcattttata 320
Query: 120 aaaatgagtcactgatttatttccatgcttaattataactgaatttcttttaaaaattga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatgagtcactgatttatttccatgcttaattataactgaatttcttttaaaaattga 380
Query: 180 aaacctcccagtgtaggggaatgccaggacagggaagtggaagtgggtgggttggtgag 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacctcccagtgtaggggaatgccaggacagggaagtggaagtgggtgggttggtgag 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space: 146856
Effective search space used: 146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
