Query= MSMg01no454_j02.b1 MSMg01no454_j02.b1 CHROMAT_FILE:
MSMg01no454_j02.b1 PHD_FILE: MSMg01no454_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:48 2005
(615 letters)
>mm_chr5_86266972_86267985
Length = 1014
Score = 714 bits (369), Expect = 0.0
Identities = 390/397 (98%), Gaps = 1/397 (0%)
Strand = Plus / Plus
Query: 219 gacaatgactttcatgatgataatgaaagccattagcttgattcattctcttcgttcaac 278
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 419 gacaatgactttcatgatgataatgaaagtcattagcttgattcattctcttcgttcaac 478
Query: 279 atctaataaaaccttatttttcatctttgatttctgttacctcgtatattcttaaatttt 338
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 479 atctaataaaaccttatttttcatctttgatttctgttacctcatatattcttaaa-ttt 537
Query: 339 atctcatattaatgtatgggtaatttcaggagaatttctagaaacttctacctccagttc 398
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 538 atctcatattaatgtatgggtaatttcaggagaatttttaaaaacttctacctccagttc 597
Query: 399 tttagctgtcatcatacatttaattcttgttctttgttcacttttctcttatgccgcata 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tttagctgtcatcatacatttaattcttgttctttgttcacttttctcttatgccgcata 657
Query: 459 ctcttcctgggtgattgcatatacagccatatcctcaactatctcatagactgtatgcta 518
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 658 ctcttcctgggtgattgcatatacagccatatcctcaactatctcatagactatatgcta 717
Query: 519 ataagtaacaaatgctttcctgcagaatatacataattcctgggcttctaataaaactag 578
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 718 ataagtaacaaatgctttcctgcagaatatacataactcctgggcttctaataaaactag 777
Query: 579 cagattactacacattactacaagtgtcaatatcatg 615
|||||||||||||||||||||||||||||||||||||
Sbjct: 778 cagattactacacattactacaagtgtcaatatcatg 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1014
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1004
Effective search space: 607420
Effective search space used: 607420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no454_j02.g1 MSMg01no454_j02.g1 CHROMAT_FILE:
MSMg01no454_j02.g1 PHD_FILE: MSMg01no454_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:48 2005
(557 letters)
>mm_chr5_86404906_86405862
Length = 957
Score = 965 bits (499), Expect = 0.0
Identities = 514/519 (99%), Gaps = 1/519 (0%)
Strand = Plus / Minus
Query: 1 atgtgctccatcctccaagattaaaaaaaaaccaccatcagagttcaactgctgggttgc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 519 atgtgctccatcctccaagattaaaaaaaacccaccatcagagttcaactgctgggttgc 460
Query: 61 catgggcacgggtttctttccatgctatgttgtagagcacttaatactcaggagttattg 120
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 459 catgggcacaggtttctttccgtgctatgttgtagagcacttaatactcaggagttattg 400
Query: 121 atgggcaggaagtaaagttgtgttctcgctattcttttcaggccagcattatttattcat 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 atgggcaggaagaaaagttgtgttctcgctattcttttcaggccagcattatttattcat 340
Query: 181 tggctgcaagccttgctaaattccactgggtggcttttacctgtgtcacagctgtaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tggctgcaagccttgctaaattccactgggtggcttttacctgtgtcacagctgtaagca 280
Query: 241 tctgacattggtttataatgttttggaaataatctgacaaaactgtggaatctcacaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tctgacattggtttataatgttttggaaataatctgacaaaactgtggaatctcacaaag 220
Query: 301 taaataaattaccattcttaaaacaaaaaaaaa-caaaaacaaaacaaaaaaacaaaaca 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 219 taaataaattaccattcttaaaacaaaaaaaaaacaaaaacaaaacaaaaaaacaaaaca 160
Query: 360 aaaagtcaggcaaatcccactaaaagagcaaagaaaaccaatagttttctagtaggtagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aaaagtcaggcaaatcccactaaaagagcaaagaaaaccaatagttttctagtaggtagt 100
Query: 420 ttacaacaaatacacaatgctcccttggccataaccacgtccccattcattatgacctct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ttacaacaaatacacaatgctcccttggccataaccacgtccccattcattatgacctct 40
Query: 480 gcaaagtttagttggattgataaatatttatgctggtag 518
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 gcaaagtttagttggattgataaatatttatgctggtag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
