Query= MSMg01no454_l03.b1 MSMg01no454_l03.b1 CHROMAT_FILE:
MSMg01no454_l03.b1 PHD_FILE: MSMg01no454_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:58 2005
(471 letters)
>mm_chr5_59581882_59582752
Length = 871
Score = 764 bits (395), Expect = 0.0
Identities = 447/489 (91%), Gaps = 38/489 (7%)
Strand = Plus / Plus
Query: 21 gagattttcttcgtatctgtacatacaaaatgctagttaaattagtagaataagtgagct 80
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 183 gagattttcttcgtatctgtacatacaaagtgctagttaaattagtagaataagtgagct 242
Query: 81 cagactcagtgagaaataaagtagaaagcacttgaagaagattcccagcgtgaacctctg 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cagactcagtgagaaataaagtagaaagcacttgaagaagattcccagcgtgaacctctg 302
Query: 141 gagtgcacatacatccccaaacatgtacacagacatttaacatgattgcatatgagtgtg 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gagtgcacatacatccccaaacatgtacacagacatttaacatgattgcatatgagtgtg 362
Query: 201 tatcacatatctctaagtgaaaacagagaaagagaaagagtgggaaaaaattaaagagct 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tatcacatatctctaagtgaaaacagagaaagagaaagagtgggaaaaaattaaagagct 422
Query: 261 agaaagacacacactcactcaagggagagagagagagagagagag--------------- 305
|||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 423 agaaagacacacacacacacaagggagagagagagagagagagagagagagagagagaga 482
Query: 306 -----------------------ggaggcagagagaaggaagagacaacagaagagacag 342
|||||||||||||||||||||||||||||||||||||
Sbjct: 483 gagagagagagagagagaaagagggaggcagagagaaggaagagacaacagaagagacag 542
Query: 343 aagagatggaggctgagagagagagctattagacaagcattataccattttaagactgaa 402
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 543 aagagatggaggctgagagagagagctattagacaagcattatacaattttaagactgaa 602
Query: 403 tactttaacatccaatacaaaacacatttcctctaaacaatgctgtgagtgtctgttctg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tactttaacatccaatacaaaacacatttcctctaaacaatgctgtgagtgtctgttctg 662
Query: 463 aacatttca 471
|||||||||
Sbjct: 663 aacatttca 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no454_l03.g1 MSMg01no454_l03.g1 CHROMAT_FILE:
MSMg01no454_l03.g1 PHD_FILE: MSMg01no454_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:58 2005
(484 letters)
>mm_chr5_59758898_59759781
Length = 884
Score = 327 bits (169), Expect = 1e-93
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 316 catagctgtggttaagtttttaaaaattatcaaatattcttggcacttaattccctagtt 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catagctgtggttaagtttttaaaaattatcaaatattcttggcacttaattccctagtt 625
Query: 376 aattattttgtattttagatttgccagcataaaacaaacagccattaagatccagtatcc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aattattttgtattttagatttgccagcataaaacaaacagccattaagatccagtatcc 565
Query: 436 cagatcaaatatttcaaatattttaacatgtatcataattttattaaca 484
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagatcaaatatttcaaatattttaacatgtatcataattttattaaca 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|