BAC Information

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BAC

Clone NameMSMg01-454L03
Chromosome5 (Build37)
Map Location 59,582,064 - 59,759,581
singlet/doubletdoublet
Overlap geneLOC100041425
Upstream geneLOC100041385, LOC100041396, LOC666499, EG625870
Downstream geneLOC546866, Cbfa2t2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454L03.T7 (MSMg01no454_l03.b1)MSMg01-454L03.TJ (MSMg01no454_l03.g1)
ACCAG541411AG541412
length767732
length of high quality
(start - end)
471 (51 - 521)484 (78 - 561)
definitionCHROMAT_FILE: MSMg01no454_l03.b1 PHD_FILE: MSMg01no454_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:58 2005CHROMAT_FILE: MSMg01no454_l03.g1 PHD_FILE: MSMg01no454_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,582,064 - 59,582,552)(59,759,413 - 59,759,581)
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCTATTTCCGAGATTTTCTTCGTATCTGTACATACAAAA
TGCTAGTTAAATTAGTAGAATAAGTGAGCTCAGACTCAGTGAGAAATAAA
GTAGAAAGCACTTGAAGAAGATTCCCAGCGTGAACCTCTGGAGTGCACAT
ACATCCCCAAACATGTACACAGACATTTAACATGATTGCATATGAGTGTG
TATCACATATCTCTAAGTGAAAACAGAGAAAGAGAAAGAGTGGGAAAAAA
TTAAAGAGCTAGAAAGACACACACTCACTCAAGGGAGAGAGAGAGAGAGA
GAGAGGGAGGCAGAGAGAAGGAAGAGACAACAGAAGAGACAGAAGAGATG
GAGGCTGAGAGAGAGAGCTATTAGACAAGCATTATACCATTTTAAGACTG
AATACTTTAACATCCAATACAAAACACATTTCCTCTAAACAATGCTGTGA
GTGTCTGTTCTGAACATTTCATTAGTTCCACAAGAAATACAGGTTAAAAA
AAAAAGAACAAATATCTGGAAAAAATTTGGAAACATTTGAAAAATAAAAA
TACTTTTCATTTGGGAAACATGATTGCCTATTTTCAAGACATTTTTCCCT
CCTTTTTATTTTGGCCACCTTTATCTGGCTGGACGTTGGCTATGAGAAAC
ACCTAACTTTTGGCCATCCCTCTTTTTCAAACACACCACGGCTTTAAAGG
GGTCACCTCTTTCCCCG
AACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTACCAGCGAAAATCCAGATGTTTCCCATTGCTTCCT
GACAGGTACCTATTTCTGTATGTGCTAACATTGAAAGGAAAACCAGTCAC
TCAATTGCTTCATTTTTAATATTTTCATGCTTTGATAGCATTATTAAAAT
TTTATATTATGAGTACCATTTTATTTAAATATTTAATTTGTCCTGCTTTT
AACATGGTTGTCTTTTAAGAAAGTCAGAGCCATAACTTGTATTAGTCTAA
TGTGATACTCTTAAGAATTTTTTGTTTGATATTATATGACATTACCATGT
AGGCAGCTCCATCGATGTAGGCTTTTGGTTGGACATGTTTTACATAGCTG
TGGTTAAGTTTTTAAAAATTATCAAATATTCTTGGCACTTAATTCCCTAG
TTAATTATTTTGTATTTTAGATTTGCCAGCATAAAACAAACAGCCATTAA
GATCCAGTATCCCAGATCAAATATTTCAAATATTTTAACATGTATCATAA
TTTTATTAACATTTGATTATTATATAGTAAATCGATGAAACCTTGCTTTC
ATAATTTATTTTCCACACACAGTTTTAATTATTTTTAATTTAAAATATCC
AAATATCCGGAAGTATCAAATTGAAAAGGCCCAAACCCCCTTTTTAATTT
CGAAAATACCCAAAACAACTTGTATTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_l03.b1 MSMg01no454_l03.b1 CHROMAT_FILE:
MSMg01no454_l03.b1 PHD_FILE: MSMg01no454_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:58 2005
         (471 letters)



>mm_chr5_59581882_59582752
          Length = 871

 Score =  764 bits (395), Expect = 0.0
 Identities = 447/489 (91%), Gaps = 38/489 (7%)
 Strand = Plus / Plus

                                                                       
Query: 21  gagattttcttcgtatctgtacatacaaaatgctagttaaattagtagaataagtgagct 80
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 183 gagattttcttcgtatctgtacatacaaagtgctagttaaattagtagaataagtgagct 242

                                                                       
Query: 81  cagactcagtgagaaataaagtagaaagcacttgaagaagattcccagcgtgaacctctg 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cagactcagtgagaaataaagtagaaagcacttgaagaagattcccagcgtgaacctctg 302

                                                                       
Query: 141 gagtgcacatacatccccaaacatgtacacagacatttaacatgattgcatatgagtgtg 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gagtgcacatacatccccaaacatgtacacagacatttaacatgattgcatatgagtgtg 362

                                                                       
Query: 201 tatcacatatctctaagtgaaaacagagaaagagaaagagtgggaaaaaattaaagagct 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tatcacatatctctaagtgaaaacagagaaagagaaagagtgggaaaaaattaaagagct 422

                                                                       
Query: 261 agaaagacacacactcactcaagggagagagagagagagagagag--------------- 305
           |||||||||||||| ||| ||||||||||||||||||||||||||               
Sbjct: 423 agaaagacacacacacacacaagggagagagagagagagagagagagagagagagagaga 482

                                                                       
Query: 306 -----------------------ggaggcagagagaaggaagagacaacagaagagacag 342
                                  |||||||||||||||||||||||||||||||||||||
Sbjct: 483 gagagagagagagagagaaagagggaggcagagagaaggaagagacaacagaagagacag 542

                                                                       
Query: 343 aagagatggaggctgagagagagagctattagacaagcattataccattttaagactgaa 402
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 543 aagagatggaggctgagagagagagctattagacaagcattatacaattttaagactgaa 602

                                                                       
Query: 403 tactttaacatccaatacaaaacacatttcctctaaacaatgctgtgagtgtctgttctg 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tactttaacatccaatacaaaacacatttcctctaaacaatgctgtgagtgtctgttctg 662

                    
Query: 463 aacatttca 471
           |||||||||
Sbjct: 663 aacatttca 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no454_l03.g1 MSMg01no454_l03.g1 CHROMAT_FILE:
MSMg01no454_l03.g1 PHD_FILE: MSMg01no454_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:58 2005
         (484 letters)



>mm_chr5_59758898_59759781
          Length = 884

 Score =  327 bits (169), Expect = 1e-93
 Identities = 169/169 (100%)
 Strand = Plus / Minus

                                                                       
Query: 316 catagctgtggttaagtttttaaaaattatcaaatattcttggcacttaattccctagtt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catagctgtggttaagtttttaaaaattatcaaatattcttggcacttaattccctagtt 625

                                                                       
Query: 376 aattattttgtattttagatttgccagcataaaacaaacagccattaagatccagtatcc 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aattattttgtattttagatttgccagcataaaacaaacagccattaagatccagtatcc 565

                                                            
Query: 436 cagatcaaatatttcaaatattttaacatgtatcataattttattaaca 484
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagatcaaatatttcaaatattttaacatgtatcataattttattaaca 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)