Query= MSMg01no454_l04.b1 MSMg01no454_l04.b1 CHROMAT_FILE:
MSMg01no454_l04.b1 PHD_FILE: MSMg01no454_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:59 2005
(444 letters)
>mm_chr5_9579004_9579849
Length = 846
Score = 772 bits (399), Expect = 0.0
Identities = 435/447 (97%), Gaps = 4/447 (0%)
Strand = Plus / Plus
Query: 1 gttcccatcacatgagttatctgtccatatagggtgccaatcatactgttattgcaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttcccatcacatgagttatctgtccatatagggtgccaatcatactgttattgcaaaaa 260
Query: 61 gggattagtcattttttttc-ctttcgggcacattagctgcagcacatctggaaacatgc 119
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggattagtcattttttttttctttcgggcacattagctgcagcacatctggaaacatgc 320
Query: 120 ttcccccaccccttacgagggtaaaacactataaagtagcaagagttaatttgaatttag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcccccaccccttacgagggtaaaacactataaagtagcaagagttaatttgaatttag 380
Query: 180 gaagttatgtaatatgata-tagtagagtaaatggcagtctgctcagcataatctgaaaa 238
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gaagttatgtaatatgataatagtagagtaaatggcagtctgctcagtataatctgaaaa 440
Query: 239 gtcacccaggtttacattc-caggggctttgaaaatataggagtcagagatgcttcctgc 297
|||||| ||| |||||| | |||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 gtcaccgaggcttacat-cgcaggggctttgaaaatataggagtcaaagatgcttcctgc 499
Query: 298 cattttctatcttgacatagtcccagtgatgatccatagaaatctcaaggaaaagaccct 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 cattttctatcttgacatagtcccagtgatgatccatggaaatctcaaggaaaagaccct 559
Query: 358 taaggatgtccccaactgttctttctatttcagtttcccctaaaaccatcccactaagca 417
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 560 taaggatgtccccaactgttctttctatttcagtttcccctaaacccatcccactaagca 619
Query: 418 cctgcggtctgcagtccggatcatcgt 444
|||||||||||||||| ||||||||||
Sbjct: 620 cctgcggtctgcagtctggatcatcgt 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 846
Length adjustment: 10
Effective length of query: 434
Effective length of database: 836
Effective search space: 362824
Effective search space used: 362824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no454_l04.g1 MSMg01no454_l04.g1 CHROMAT_FILE:
MSMg01no454_l04.g1 PHD_FILE: MSMg01no454_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:59 2005
(429 letters)
>mm_chr5_9715394_9716222
Length = 829
Score = 814 bits (421), Expect = 0.0
Identities = 427/429 (99%)
Strand = Plus / Minus
Query: 1 ttcctgcctagtatttgtgaggcatccggttcagtcctctgaagcacactcccaggggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttcctgcctagtatttgtgaggcatccggttcagtcctctgaagcacactcccaggggaa 570
Query: 61 aatcttggtaaataattggctttcaaagaactcaatggaaactcatcacttaaatataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aatcttggtaaataattggctttcaaagaactcaatggaaactcatcacttaaatataaa 510
Query: 121 ttcctagacatcttcctcaacaccaacatctgcttttcctattcacccaagatagctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttcctagacatcttcctcaacaccaacatctgcttttcctattcacccaagatagctcct 450
Query: 181 gtttatcaatgtggtcttttgatgtgttttattcctcttttctgcaaacctatagttaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gtttatcaatgtggtcttttgatgtgttttattcctcttttctgcaaacctatagttaaa 390
Query: 241 tcttttttcataatcatcaaagcctatgatattttcatctgtcttataaaagttttatct 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tctaatttcataatcatcaaagcctatgatattttcatctgtcttataaaagttttatct 330
Query: 301 aaagcatctatgcagtcttatgtaggcctgaatagtaacttctgttttgtctggaataga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aaagcatctatgcagtcttatgtaggcctgaatagtaacttctgttttgtctggaataga 270
Query: 361 ttataggtagaataataagtttattttttattcttactccttatttaaggtttatttaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttataggtagaataataagtttattttttattcttactccttatttaaggtttatttaag 210
Query: 421 gtttattca 429
|||||||||
Sbjct: 209 gtttattca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
