BAC Information

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BAC

Clone NameMSMg01-455A14
Chromosome5 (Build37)
Map Location 105,843,543 - 106,034,230
singlet/doubletdoublet
Overlap geneLrrc8b, Lrrc8c
Upstream geneSpp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650
Downstream geneLrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455A14.T7 (MSMg01no455_a14.b1)MSMg01-455A14.TJ (MSMg01no455_a14.g1)
ACCAG541671AG541672
length734778
length of high quality
(start - end)		585 (65 - 649)239 (67 - 305)
definitionCHROMAT_FILE: MSMg01no455_a14.b1 PHD_FILE: MSMg01no455_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:26 2005CHROMAT_FILE: MSMg01no455_a14.g1 PHD_FILE: MSMg01no455_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,033,806 - 106,034,230)(105,843,543 - 105,843,781)
sequence
TCATTAAATTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
AATCCAGCTTTCCCAACCAAGCACACGCCTCCCAGATATATACTTGCTGA
GAGACACCCAGGGCCACTGCCAGTCCTCCTACATCTGGTGCTATCAGAGT
GGGCGTGATAACACCTCTTCCACCTTTCTAGGGGTGAGGATGACGATGGT
AAAGACTATAGCAGCACACATATGATGTGCTCAACACCCATCTGTCCATA
TTTTAAAATCAGTATTAATTCTCAATTGTCACCTTTAAATTTTATTTTAT
TAGACAGGATACTGTGTCGCTCAGGCCGGCCTCAGACACCCCATGTAGCC
AAGAATGACCCTGCACTCCTGTTCCTCTTGATTCTACCCCAAAAGGGCTG
GCATTACCAGCCCCTGTTGACATGCCTGGTTTAATTGCCACCTTAATCTG
ATAAAGCAACATGCTTATGATTCCCATTTCATAGTGCTAGAGACCAAGGC
ATTAAACCAAGCAGCTAAACTCACATCATATAGCCCAAGGCCTAGAGTCC
TCTTCTTATTTTATATAACTGGTACATCTGAATAGGTAGGTCTTTATTGC
TTTCTTTTTTAAAAAACATCTTTTTAAAACATCTTTTTAAATTTTTATGT
GTCTGTCTGCCTGTGGGCTGTGGGCCTGTATGTCTGTGTGGGTTTGCGGA
GTGCCTGTATGTCTCTCTGTGTGAGCGGATGCTC

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCCCCCGCGGAATTCTGGTCTTCTGCAAGAACGGTCTGTGCTCT
TAGCTGTGGAGCCGTTAGTCCTCACAGTGTTTTCAATGTTTGCTTCAGAC
TCAATGCAACTGCCACTCAGAGTGAATTGGACAAGGACCGGGTATAGCAG
TGACTTCCAGGGCAGTTCGGGCTGGAGTTCTGATATGACTGGTCGCTACT
GGATACAGCGCAGTCTTCCACACCTTCGTAGTGTGTGGAGGTATTGGGTG
CCCAATTGTTTTTGTGATTCAAATGCTGTCTTCTTTTATTCCTCTGGGAG
TGTTTTGTTACCTAGGGATGGGAACACCATAGTAACTAAAAGATACAAAT
CTTGCTGAACTGAATCCTTTGTCTTATTAATAACCTGGACAAATACTTGA
GCTTAACACACATCTTGTATTCTGTTGCCTAGCTAATTGATTCAGTGTTT
TCTTTTATCGCCTCTTTTCTTTTTCTCCATTTTTCTGATTTCGATTCGTT
TTTTTTGCGCCCACTTTTGATATTATCATTTATACTATCGCCAATATATC
TCATTTATTTAATAAATTATACTATACTCTCTCTCTCTGCCTCTTTGTTC
CTTTTTATAATTTTTCACACTTATTCCACTCCTAATACTCTATTTTTTTT
TCCCCCTTCTTTTCCATTATTACCTTTTTTTTTTTTTTCTATTTTTCTTT
TCTTTTATTTTTTACTCACTCCTCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_a14.b1 MSMg01no455_a14.b1 CHROMAT_FILE:
MSMg01no455_a14.b1 PHD_FILE: MSMg01no455_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:26 2005
         (585 letters)



>mm_chr5_106033806_106034790
          Length = 985

 Score =  752 bits (389), Expect = 0.0
 Identities = 416/425 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccaagcacacgcctcccagatatatacttgctgagagacacccagggccactgccagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 425 aaccaagcacacgcctcccagatatatacttgctgagagacacccagggccaccgccagt 366

                                                                       
Query: 61  cctcctacatctggtgctatcagagtgggcgtgataacacctcttccacctttctagggg 120
           |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cctcctacgtctggttctattagagtgggcgtgataacacctcttccacctttctagggg 306

                                                                       
Query: 121 tgaggatgacgatggtaaagactatagcagcacacatatgatgtgctcaacacccatctg 180
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 305 tgaggatgacgatggtaaagactacagcagtacacatatgatgtgctcaacacccatctg 246

                                                                       
Query: 181 tccatattttaaaatcagtattaattctcaattgtcacctttaaattttattttattaga 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tccatattttagaatcagtattaattctcaattgtcacctttaaattttattttattaga 186

                                                                       
Query: 241 caggatactgtgtcgctcaggccggcctcagacaccccatgtagccaagaatgaccctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 185 caggatactgtgtcgctcaggccggcctcagacaccccatgtagccaagaatgaccctga 126

                                                                       
Query: 301 actcctgttcctcttgattctaccccaaaagggctggcattaccagcccctgttgacatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 actcctgttcctcttgattctaccccaaaagggctggcattaccagcccctgttgacatg 66

                                                                       
Query: 361 cctggtttaattgccaccttaatctgataaagcaacatgcttatgattcccatttcatag 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cctggtttaattgctaccttaatctgataaagcaacatgcttatgattcccatttcatag 6

                
Query: 421 tgcta 425
           |||||
Sbjct: 5   tgcta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no455_a14.g1 MSMg01no455_a14.g1 CHROMAT_FILE:
MSMg01no455_a14.g1 PHD_FILE: MSMg01no455_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:26 2005
         (239 letters)



>mm_chr5_105843343_105843981
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctggtcttctgcaagaacggtctgtgctcttagctgtggagccgttagtcctcaca 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctggtcttctgcaagaacagtctgtgctcttagctgtggagccgttagtcctcaca 260

                                                                       
Query: 61  gtgttttcaatgtttgcttcagactcaatgcaactgccactcagagtgaattggacaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgttttcaatgtttgcttcagactcaatgcaactgccactcagagtgaattggacaagg 320

                                                                       
Query: 121 accgggtatagcagtgacttccagggcagttcgggctggagttctgatatgactggtcgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accgggtatagcagtgacttccagggcagttcgggctggagttctgatatgactggtcgc 380

                                                                      
Query: 181 tactggatacagcgcagtcttccacaccttcgtagtgtgtggaggtattgggtgcccaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactggatacagcgcagtcttccacaccttcgtagtgtgtggaggtattgggtgcccaa 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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