BAC Information

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BAC

Clone NameMSMg01-455C18
Chromosome5 (Build37)
Map Location 43,423,214 - 43,423,588
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040588, EG636612, LOC433883
Downstream geneEG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455C18.T7 (MSMg01no455_c18.b1)MSMg01-455C18.TJ (MSMg01no455_c18.g1)
ACCAG541775AG541776
length899795
length of high quality
(start - end)
---375 (132 - 506)
definitionCHROMAT_FILE: MSMg01no455_c18.b1 PHD_FILE: MSMg01no455_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:36 2005CHROMAT_FILE: MSMg01no455_c18.g1 PHD_FILE: MSMg01no455_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTGTTCTTCNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNCCCCCNNNN
NNNNNNNCCCNAAAANNNNNNNCNNNCCCCCNNAAAAANAAANCCCNNNN
ACTCCCAAAANAAANNANNNNNNNNNNNAANNNNNNNGNATTTTTCCCCC
AANNNACNNNNNNANNCANNNNNAANGGNNNNNNNNGGAAANNNNNGGCC
CAAAAGGGNNNNCCCCCCCCCCCCCCCCACACAAAAAACAAACCCCNCNN
CNNCCCCNCNGCCCCCCNCAACCCCNCNNNNCAAACACCNNNNCCAACCC
CCCCNNNNNNNNNCCCCNCCCCCCCNNNNCCCCCACCNNGTCAGNGGTGT
CGTTTTTTTTGTGCCTTGTGCGGGGCGGGGGCTGGGGAGATGCTGGGGGG
GGGGGTCTGTCTGTTTGTTTTTGTTGCTGTCTTTTTNGGGGNNNGGGGGG
GGGGGGGGGGGGGGGGGCTAGGGAGGGGGGAGGGGGGGGTCTTCTGTTCT
TTTTTCTGTTTTTCTGTGTGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNANNTATTANTTTTTTTGTTTTGTGTT
TTATTTCCTTTTTTCTTTTTCCTCTCACGCTTTGTGTTTACACTTTTTTA
TATTTCCGAAGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGGAACAGAACTGTGC
TTGTGTGGGGGTCACTTAATCGCCTTCTAAGTGTTTTGATTCTCTTTTGC
AAAGGGACTGATTTTTCTTTTTCTTTTTCAGACTTAGTGGAGTGCCAAAA
GAGCAAAGAGCAGTCAGTGAGTGGAAAGCAGGTAACACAAAATAAGCAGA
GAGAGTTCAGCAAAGCACATGACCAACTCCAGCCTCCCAGTAGTGCACGG
GGGCATTTTAGCTTAATGCTGTAGCTGCCTCAGGGCAGTATTTGCTACTC
ATTACCCTGCCTTTTCCTTCTGGTAGGAAGCCAAAGCAGAATTTGGAGCC
ACGTGATGGTACAGCCTCACTTTGTGCTGTTCTTTAGAGGTAGAGAGATC
TTGACATGCATAGTATGCTTGGCTAGAATTTTATAAAGTTCCTCTTTAAT
CAGAAGGCTTTGAGGGAATATGACTGCTCTGTGCAAACAATAGCCATTTT
ACTCCTCTGTACGTTGCTGCCTTCAGGTATAGCCACCTCTGTCAAACTAG
AACTGAATCTCTGTGCTGATGAACATGACTGATGTTGAATGTTCGTGCGG
CCCATCCTTATGAATCCTTCCTTTAACTATTCCAGTCCCCATCCTCTTGA
TTGCCGTTCAATTAATCAGACCTGTGGTTGGAATATCTCCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_c18.g1 MSMg01no455_c18.g1 CHROMAT_FILE:
MSMg01no455_c18.g1 PHD_FILE: MSMg01no455_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:36 2005
         (375 letters)



>mm_chr5_43423014_43423788
          Length = 775

 Score =  687 bits (355), Expect = 0.0
 Identities = 370/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaggaacagaactgtgcttgtgtgggggtcacttaatcgccttctaagtgttttgatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ataaggaacagaactgtgcttgtgtgggggtcacttaatcgccttctaagtgttttgatt 516

                                                                       
Query: 61  ctcttttgcaaagggactgatttttctttttctttttcagacttagtggagtgccaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ctcttttgcaaagggactgatttttctttttctttttcagacttagtggagtgccaaaag 456

                                                                       
Query: 121 agcaaagagcagtcagtgagtggaaagcaggtaacacaaaataagcagagagagttcagc 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 455 agcaaagagcagtcagtgagtggaaagcaggtaacacaaaataaacagagagagttcagc 396

                                                                       
Query: 181 aaagcacatgaccaactccagcctcccagtagtgcacgggggcattttagcttaatgctg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 395 aaagcacatgaccaactccagcctcccagtagtgcatgggggcattttagcttcatgctg 336

                                                                       
Query: 241 tagctgcctcagggcagtatttgctactcattaccctgccttttccttctggtaggaagc 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 335 tagctgcctcagggcagtatttgctactcattaccctgccttttccctctggtaggaagc 276

                                                                       
Query: 301 caaagcagaatttggagccacgtgatggtacagcctcactttgtgctgttctttagaggt 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 275 caaagcagaatttggagccacgcgatggtacagcctcactttgtgctgttctttagaggt 216

                          
Query: 361 agagagatcttgaca 375
           |||||||||||||||
Sbjct: 215 agagagatcttgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)