BAC Information

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BAC

Clone NameMSMg01-455E21
Chromosome5 (Build37)
Map Location 108,813,903 - 108,814,393
singlet/doubletsinglet
Overlap genenone
Upstream geneBrdt, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg
Downstream genePde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455E21.T7 (MSMg01no455_e21.b1)MSMg01-455E21.TJ (MSMg01no455_e21.g1)
ACCAG541876AG541877
length744765
length of high quality
(start - end)
491 (70 - 560)236 (76 - 311)
definitionCHROMAT_FILE: MSMg01no455_e21.b1 PHD_FILE: MSMg01no455_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:46 2005CHROMAT_FILE: MSMg01no455_e21.g1 PHD_FILE: MSMg01no455_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTAAAATCTGCGGCCGCTAAAGGAATCACTTTCAAAAGAGGATCCGCGG
AATTCTATTTCCACATATGTTGACCCATTAGATAAATGGGCCACATCAGA
CCAGGGCTAGTTTGTGAATGTTAAGTAGGAAATCCCAACACCTTGGCCCA
GAGCTTTAGATAAAACAAAACAAACAAATGAAGGGTTCCCACTGGGGGAA
CATTGAAAAACTCTCTAAGGGGGGGAATGTATGAATATACGTGTATTTCC
ATATGCTGACGTGGACTCACACTGCCAGATGCCAAGGACCCCAGCATGGC
TCCTAAGCCTCCCTTGTTACGTGGGTGGACAAAAGACCCAAGACTAGCAG
TAAACATGCATTATGCTTCTTGCCTTGTGTGATGCCTCCTCACTAGCAAG
CACATCCTGGCCAGGCTCAGGGGGAAGATTCATCAGAGGGACCTTCCCAG
TGCCACCACCCTGTTCTGAGCCCTGCAGCCATGTCTGGATAGCAACATCC
AGGGCTGGCCTTCTATATCGCCAGTAGAAGTATGAAGTTGATCACAGGTG
CCCTCCTAGGACTATGGGTGGGCACTGCACTTGGACAGCTAAAGAACAAT
TTTCAGCTTCAGGGCACTGTTCCCCACACAGCAAGCACAGGACCTGCTTT
CTCCATGTGATCCAACATTATCTTCTGGCCAAACCTGTTTGCTAGGGGAA
TACTTCCCACAAATCCCCTCCCGAAACTCTGAAAGGGAACGGGG
CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATGTAGACTAGGCTGACCTTGAA
CTCACAGAGATCCTACACATCTTTTTTTTTTTTTTTTTTTTTTTGAGACA
TGTAACCTCTCTATGTAACCTTGTCTTGCTTGGAATTTGCTACGAAGACC
AGACTGGCCTCAAAATCTTAGAGAGCTTTCTGCCACTCAGCCTCGGTCTC
ACAAATGTTAGCCTTAAAGGTGTGTTCCACCATGCAAGATGTGAAGATTG
TTTTAAGCACATTTTTTTATAAGTCAATGGAAGAAAGGAGATGAATGCAT
AAAAATGTTTATTTAGCCAGAGTGAATTAAAGAAGAAAAATGAAGCCCAG
AACATGAATAGAACAAAATACCAATTTTAGTCCATGGCATGTTGGCATTG
AGAGCACAAAGAATCTAAGAGCTCCAGTCTAAGAACAAGGATATGGACAC
TGAAGAGATAAGTTTGTAGCAGCACATAGAGCATTCTGCATCAGTGGCCC
CTGTGCTGTATGGCCTATGGATTGTCCTACTCCCCATCATAAGGGTCCTA
ATTCTGGTTTCAGGCTGTTTTTTGTGGGCCCCAGCCCCATTTGTCCTGTT
GAATACTTCCCCCCCTTATATTCCCATAAATTTTGGTCTCCCCTTTTCTT
TTTGGCCCTACTTCCACAAATCCCTCTTTGGTTTACGTGTCAATTCTTCT
TGCCCATTGTTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_e21.b1 MSMg01no455_e21.b1 CHROMAT_FILE:
MSMg01no455_e21.b1 PHD_FILE: MSMg01no455_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:46 2005
         (491 letters)



>mm_chr5_108813703_108814593
          Length = 891

 Score =  942 bits (487), Expect = 0.0
 Identities = 490/491 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgacccattagataaatgggccacatcagaccagggctagtttgtgaatgttaagtagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgacccattagataaatgggccacatcagaccagggctagtttgtgaatgttaagtagg 260

                                                                       
Query: 61  aaatcccaacaccttggcccagagctttagataaaacaaaacaaacaaatgaagggttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatcccaacaccttggcccagagctttagataaaacaaaacaaacaaatgaagggttcc 320

                                                                       
Query: 121 cactgggggaacattgaaaaactctctaagggggggaatgtatgaatatacgtgtatttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgggggaacattgaaaaactctctaagggggggaatgtatgaatatacgtgtatttc 380

                                                                       
Query: 181 catatgctgacgtggactcacactgccagatgccaaggaccccagcatggctcctaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catatgctgacgtggactcacactgccagatgccaaggaccccagcatggctcctaagcc 440

                                                                       
Query: 241 tcccttgttacgtgggtggacaaaagacccaagactagcagtaaacatgcattatgcttc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccttggtacgtgggtggacaaaagacccaagactagcagtaaacatgcattatgcttc 500

                                                                       
Query: 301 ttgccttgtgtgatgcctcctcactagcaagcacatcctggccaggctcagggggaagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgccttgtgtgatgcctcctcactagcaagcacatcctggccaggctcagggggaagat 560

                                                                       
Query: 361 tcatcagagggaccttcccagtgccaccaccctgttctgagccctgcagccatgtctgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatcagagggaccttcccagtgccaccaccctgttctgagccctgcagccatgtctgga 620

                                                                       
Query: 421 tagcaacatccagggctggccttctatatcgccagtagaagtatgaagttgatcacaggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagcaacatccagggctggccttctatatcgccagtagaagtatgaagttgatcacaggt 680

                      
Query: 481 gccctcctagg 491
           |||||||||||
Sbjct: 681 gccctcctagg 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)