BAC Information

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BAC

Clone NameMSMg01-455H03
Chromosome5 (Build37)
Map Location 109,209,903 - 109,210,567
singlet/doubletsinglet
Overlap gene1810008K16Rik
Upstream geneEvi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564
Downstream geneEG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455H03.T7 (MSMg01no455_h03.b1)MSMg01-455H03.TJ (MSMg01no455_h03.g1)
ACCAG541983AG541984
length739740
length of high quality
(start - end)
676 (64 - 739)652 (73 - 724)
definitionCHROMAT_FILE: MSMg01no455_h03.b1 PHD_FILE: MSMg01no455_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:57 2005CHROMAT_FILE: MSMg01no455_h03.g1 PHD_FILE: MSMg01no455_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACATGTTCCACATTTCCACAGAATTGGAGAGATAGACAGATGGATACA
AAGAATTACAACTCACTAGAGCAAAAATGCACAAGTAAAAAAAAATCTAT
GGAAGCTGGTACTAGATTCCTTGTACCAGGTACATCATATCATATTTATA
TCTATATTTATATCTACATATATTATCTGTATATTATATCTACATCTCTC
TATATATCTATGTATGTTATAATGAAAGGTGAAAATCATGCATGAAGAGA
GTACAGCATAAATGCTAGGATATTAGAATCAAGGATATTAGAATTGCCAG
AGCAAGAATTTTTCTGCTAAAGGATTACCAGGCCAGGAAGTTTTGTAAAA
TATGTGCCAAAGAATATAATGGGAAAAGTAGACAACCCAAAAGAAAATGT
GGGTCATATGAATAGAGAAACTCTAAGAAAATAAATGATGAGACAGAATA
TACTGTAAAAAGAAATAAAGGCTGTTTTTAGGGTATTTATTAGTGGTTGG
CTGTTACTGAAAATAGATTTTTTAAAATCTGAGAATAGACTGACTTCCAA
AACCAAAAAACAAAAGGAAAACTAAGTGGGACAAAATATCCAAGAACGTG
GAGGAAACTACAAAAACTTAATATCCATACTGGTGGTATCAGCAAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTGCCTACTCATTAACAT
TCAAATTCGCTTCTAGTAGAGACAGTGAAACTAATTAGGCATTACAAAGA
ACAAAGCTAGATAAGCTCAGGGCTAGTCTGCATAGTGATTACTTAGGACA
ATAGCCGAGTCTGCCCCAAACATGGGAATACACAATGGCCTAGCGAATAG
GTGGGTTAACCATGGAAATTGGTGGATGGGAATTCCCCTGGAACAGGTTT
CTTCACTAGGCCCAAAGGAATAGCATAGTCAGGTATTTACTAAGAACCCC
TGGTGGTGGGTTTAACAACAGACTAGCATTACATCAGAGCATTCACGTGG
CTCGATTTTAAGTGGTAACCAAGGTCTGGTCCCTGCCATCTTTTGATATA
TGCATTCCTTTTGTTTTGTGTCACTGTAACTTGGCAGATGTTTCCACCTG
GCTTTTCTTGTTTTTCTTCTGTATAAAAAAGTCCAGTGTTCGTTTGGACA
TTAAATTCAGATCCAACACACTCTCATGTTGCGTCTGTTTGTCACCCTCT
CTCACCGACTCCTTTGCCCACCTACAACCAGAAACCCATTCTGTGCAGAT
AGGAGACCCAAAAGAGTATATATGTAATATAAACATATTTATATACATAT
TTATATATACACTTTGCTTTTGAAAATAGTCTTTGAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_h03.b1 MSMg01no455_h03.b1 CHROMAT_FILE:
MSMg01no455_h03.b1 PHD_FILE: MSMg01no455_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:57 2005
         (676 letters)



>mm_chr5_109209692_109210767
          Length = 1076

 Score = 1212 bits (627), Expect = 0.0
 Identities = 659/677 (97%), Gaps = 13/677 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttccacagaattggagagatagacagatggatacaaagaattacaactcactagagca 60
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 atttccatggaattggagagatagacagatggatacaaagaattacaactcactagagca 271

                                                                       
Query: 61  aaaatgcacaagtaaaaaaaaa-tctatggaagctggtactagattccttgtaccaggta 119
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaatgcacaagtaaaaaaaaaatctatggaagctggtactagattccttgtaccaggta 331

                                                                       
Query: 120 catcatatcatatttatatctatatttatatctacatatattatctgtatattatatcta 179
           ||||||||||||||||||||||            ||||||||||||||||||||||| ||
Sbjct: 332 catcatatcatatttatatcta------------catatattatctgtatattatatata 379

                                                                       
Query: 180 catctctctatatatctatgtatgttataatgaaaggtgaaaatcatgcatgaagagagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catctctctatatatctatgtatgttataatgaaaggtgaaaatcatgcatgaagagagt 439

                                                                       
Query: 240 acagcataaatgctaggatattagaatcaaggatattagaattgccagagcaagaatttt 299
           ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 acagcataaatgcaaggatattagaatcaaggatattagaactgccagagcaagaatttt 499

                                                                       
Query: 300 tctgctaaaggattaccaggccaggaagttttgtaaaatatgtgccaaagaatataatgg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctgctaaaggattaccaggccaggaagttttgtaaaatatgtgccaaagaatataatgg 559

                                                                       
Query: 360 gaaaagtagacaacccaaaagaaaatgtgggtcatatgaatagagaaactctaagaaaat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaaaagtagacaacccaaaagaaaatgtgggtcatatgaatagagaaactctaagaaaat 619

                                                                       
Query: 420 aaatgatgagacagaatatactgtaaaaagaaataaaggctgtttttagggtatttatta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatgatgagacagaatatactgtaaaaagaaataaaggctgtttttagggtatttatta 679

                                                                       
Query: 480 gtggttggctgttactgaaaatagattttttaaaatctgagaatagactgacttccaaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtggttggctgttactgaaaatagattttttaaaatctgagaatagactgacttccaaaa 739

                                                                       
Query: 540 ccaaaaaacaaaaggaaaactaagtgggacaaaatatccaagaacgtggaggaaactaca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ccaaaaaacaaaaggaaaactaagtgggacaaaatatccaagaacgtggaggaaactaca 799

                                                                       
Query: 600 aaaacttaatatccatactggtggtatcagcaagagagagagagagagagagagagagag 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aaaacttaatatccatactggtggtatcagcaagagagagagagagagagagagagagag 859

                            
Query: 660 agagagagagagagaga 676
           |||||||||||||||||
Sbjct: 860 agagagagagagagaga 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)