Query= MSMg01no455_i23.b1 MSMg01no455_i23.b1 CHROMAT_FILE:
MSMg01no455_i23.b1 PHD_FILE: MSMg01no455_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:06 2005
(517 letters)
>mm_chr5_31153338_31154254
Length = 917
Score = 940 bits (486), Expect = 0.0
Identities = 507/514 (98%), Gaps = 2/514 (0%)
Strand = Plus / Minus
Query: 5 gaattctccca-tttctatccccttccccctgacaggggacagactgctcattatctcca 63
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaattctcccagttt-tatccccttccccctgacaggggacagactgctcattatctcca 471
Query: 64 actttctacaagacagccttccataaagctgtctagcacacacttccgactcagttctgt 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gctttctacaagacagccttccataaagctgtctagcacacacttccgactcagttctgt 411
Query: 124 ttgagtctggcttctgtccagctggtcatcattccaaattcactccaccctctgaccctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ttgagtctggcttctgtccagctggtcatcattccaaattcactccaccctctgaccctc 351
Query: 184 ttaaaggactaatctcaaatggagactgaccccacaagaaggatgcacactggtgagatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttaaaggactaatctcaaatggagactgaccccacaagaaggatgcacactggtgagatc 291
Query: 244 ccagaaggcctgcctaccttcctgctgtgtctctcctggcttatcacaggccttgaaatg 303
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ccagaaggcatgcctaccttcctgctgtgtctctcctggcttatcacaggccttgaaatg 231
Query: 304 gccgctgggagcacctctcatttctccccccaaggccttaatcaccaagtaagttctgaa 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 230 gccgctgggagcacctctcatttctcgccccaaggccttaatcaccaagtaagttctgaa 171
Query: 364 tgtgaagaaatgaaggctctggatccaagagatttggccaagatcatgatcagtcactga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tgtgaagaaatgaaggctctggatccaagagatttggccaagatcatgatcagtcactga 111
Query: 424 taaagttagggctgagcccaagcctctggaccccatgttagctcctcccatcacatcacg 483
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 110 taaagttagggctgagcccaagcctctggaccccaggttagctcctcccatcacatcaca 51
Query: 484 ctgacaggagagggcccatgcttgcatagctgca 517
||||||||||||||||||||||||||||||||||
Sbjct: 50 ctgacaggagagggcccatgcttgcatagctgca 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_i23.g1 MSMg01no455_i23.g1 CHROMAT_FILE:
MSMg01no455_i23.g1 PHD_FILE: MSMg01no455_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:07 2005
(480 letters)
>mm_chr5_30976832_30977711
Length = 880
Score = 882 bits (456), Expect = 0.0
Identities = 469/480 (97%), Gaps = 11/480 (2%)
Strand = Plus / Plus
Query: 1 ctatcaaaaacgtccagagtctcttatctttagctctaaatcatataaaatgtctcatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatcaaaaacgtccagagtctcttatctttagctctaaatcatataaaatgtctcatat 260
Query: 61 cagtctggaattttaaaatgtgttttcagaatttttacagattaattttagcttatttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtctggaattttaaaatgtgttttcagaatttttacagattaattttagcttatttgg 320
Query: 121 ggagaaataataaaaaataaataaaaataaaaataattccttaatgaaagaattgaagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagaaataataaaaaataaataaaaataaaaataattccttaatgaaagaattgaagta 380
Query: 181 aagttactgtaatagatgttcatgcttttttagtaaatattaagctcatcattttatacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttactgtaatagatgttcatgcttttttagtaaatattaagctcatcattttatacc 440
Query: 241 ctttgaagcagttataacggaaacaagagaagtgagatgtgcagatttcccactgatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgaagcagttataacggaaacaagagaagtgagatgtgcagatttcccactgatgaa 500
Query: 301 aggaacacacagaaaacctgccctctgtactctcgataagagcaatgtaagaggtttgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaacacacagaaaacctgccctctgtactctcgataagagcaatgtaagaggtttgca 560
Query: 361 gtaacgggacacgccacctcctggcttgaggtgctgtggtgagaccgcagtgagcacaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaacgggacacgccacctcctggcttgaggtgctgtggtgagaccgcagtgagcacaaa 620
Query: 421 ctcctgatgaagacatggctgctgactgaactcaggtctcaccgctccataaacttaccc 480
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 ctcctgatgaagacatggctgctgactgaac-----------cgctccataaacttaccc 669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
