BAC Information

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BAC

Clone NameMSMg01-456C20
Chromosome5 (Build37)
Map Location 134,391,521 - 134,391,902
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039731, LOC666038
Downstream geneLOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456C20.T7 (MSMg01no456_c20.b1)MSMg01-456C20.TJ (MSMg01no456_c20.g1)
ACCAG542541AG542542
length598771
length of high quality
(start - end)
---384 (76 - 459)
definitionCHROMAT_FILE: MSMg01no456_c20.b1 PHD_FILE: MSMg01no456_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:54 2005CHROMAT_FILE: MSMg01no456_c20.g1 PHD_FILE: MSMg01no456_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAAANNNNCNCCCAAAACACCCATTCAAAANANNNNNAANNANTTTTT
CACAAANANNCANAAAACNCCNGACAACAACAACNNAACAACAACNAAAC
CCAAGCCCGNCCCCAGNNACACCNCCNCCAACANNCAACCNNCCCCAANN
CAACCCCCAAAAGCCCNNCCAGNNCCAACNNANCCACCCCCCCCCACCNC
CAANAANACCNNACCCCAACCCCCCCGCCCCCNCCAACCACCCNNNCNNC
NNNCCTGGNNNNNGGTTTTTGTTTTTTTTGGTTTTTTTTTTTGTTTTGTT
GTTTTTGTTTTGTTTTGTTTTGTAGAGGGGGGGGGGGGGGCTTNNCNNNN
NNNNNNNNNNNNNNNNNNCNNNCNNCCCCCNNNCCCCCCNCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCNNCCCCCCCCCCCCCCCNNCNCCCCC
CCCCNCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CNCCCCNCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCACCCCCCCCAACCAAATCCCTTTTTTG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATAAGATAGGGCATGAGATGGCAC
CTCCCACCCAGAAGCCATGTGAGCATCACTCAGGAATCAGGAACTGAATC
TGGAAGGTTTTCCCAGTATGGAATAAGACCCTCCTCCTGGCTGCCTACAG
ATGGCAGTCTCTCTCCTCCTGGTTGCCTTCAGATCAAGGTGTGAAGAATC
ACTGCAGGCTTGCCTGATATGGATCTCCTAACCTCAGAGCCAAGTTGGAG
ACAAAACAGCAACTGACTTGTTTTTTTTTCGTCCTGATTGGCCTAGGCTC
AATCAAAAGCCTCCTTTGGCAAGCATTCTGTTCCATAGTTAGCCAGTAGG
CTTCAGTAACTCATGACCAACTGTTGTTTATCATATGGATTCCAAGTTCC
AGGCAGAACTACACCGAGGACATGTGAAAAAAAAAATCCCACTGGGCAGG
CAAGCACATTAGGACTCTCTAGCACTGCAGGTGGAGGAGGTTGCATGCCC
ATTTTTCTATTTTTTCGCCTGTCCCTCTATTCTTTAGATTTTCCTCTCTA
TTTCCCTGCCCTATTCTTTCCATGCACCGTGCATTTTCACTATCTTCTTT
CTTTTCTTTCCCTCATTTTCTCCTCTTCCTTTTTCTCCTCCTTGTTTTTC
TCTATTTCCTTTTTCTTTTCGGTTCTTGTTCGTATCTTTTTTCCTTTCCA
TCCTACTTTTTTTTGCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_c20.g1 MSMg01no456_c20.g1 CHROMAT_FILE:
MSMg01no456_c20.g1 PHD_FILE: MSMg01no456_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:54 2005
         (384 letters)



>mm_chr5_134391320_134392102
          Length = 783

 Score =  683 bits (353), Expect = 0.0
 Identities = 375/387 (96%), Gaps = 9/387 (2%)
 Strand = Plus / Plus

                                                                       
Query: 2   ataagatagggcatgagatggcacctcccacccagaagccatgtgagcatcactcaggaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ataagatagggcatgagatggcacctcccacccagaagccatgtgagcatcactcaggaa 261

                                                                       
Query: 62  tcaggaactgaatctggaaggttttcccagtatggaataagaccctcctcctggctgcct 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcaggaactgaatctggaaggttttcccagtatggaataagaccctcctcctggctgcct 321

                                                                       
Query: 122 acagatggcagtctctctcctcctggttgccttcagatcaaggtgtgaagaatcactgca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acagatggcagtctctctcctcctggttgccttcagatcaaggtgtgaagaatcactgca 381

                                                                       
Query: 182 ggcttgcctgatatggatctcctaacctcagagccaagttggagacaaaacagcaactga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggcttgcctgatatggatctcctaacctcagagccaagttggagacaaaacagcaactga 441

                                                                       
Query: 242 cttg----tttttttttcgtcctgattggcctaggctcaatcaaaagcctcctttggcaa 297
           ||||    ||||     | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cttgcccatttt-----catcctgattggcctaggctcaatcaaaagcctcctttggcaa 496

                                                                       
Query: 298 gcattctgttccatagttagccagtaggcttcagtaactcatgaccaactgttgtttatc 357
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcattctgttccatagttagccaataggcttcagtaactcatgaccaactgttgtttatc 556

                                      
Query: 358 atatggattccaagttccaggcagaac 384
           ||||||||||||| |||||||||||||
Sbjct: 557 atatggattccaaattccaggcagaac 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 783
Length adjustment: 9
Effective length of query: 375
Effective length of database: 774
Effective search space:   290250
Effective search space used:   290250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)